New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 682009 = | 46 (0.850) | 4 (0.080) | 4/256 | NT | 8.5% | coding (1264/1944 nt) | PP_0584 | methyl‑accepting chemotaxis transducer |
? | NC_002947 | 682041 = | 42 (0.800) | coding (1232/1944 nt) | PP_0584 | methyl‑accepting chemotaxis transducer |
TCCAGCTGTTGGATCGACTGGGCCGATTGCTCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGC > NC_002947/681861‑682147 | tCCAGCTGTTGGATCGACTGGGCCGATTGCTCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTTCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCAGCCTGGCTGCAGGACCGTGc > 3:99050/1‑149 (MQ=255) tCCAGCTGTTGGATCGACTGGGCCGATTGCTCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGc > 4:216252/1‑149 (MQ=255) ccAGCTGTTGGATCGACTGGGCCGATTGCTCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGc > 6:154592/1‑148 (MQ=255) ccAGCTGTTGGATCGACTGGGCCGATGGCTCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGc > 1:8274/1‑148 (MQ=255) ggtgccattcgcagcctgatccagcacatcggcactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccggccgccagcgcgaagccgtggacatggtttccaccgcattc > 2:261565‑M1/147‑147 (MQ=255) gtgccattcgcagcctgatccagcacatcggcactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccggccgccagcgcgaagccgtggacatggtttccaccgcattCCAc > 3:163237‑M1/146‑149 (MQ=255) gCTGTTGGATCGACTGGGCCGATTGCTCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGTTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACt < 6:26735/149‑1 (MQ=255) tCGACTGTGCCGATTGCTCTATTTCGTGGCTAAGGAGATCAATGCTGTGTACCGCAGCATCTATCTGCTGCTGCCCTTCGCGGGCCTGCTTCTTGCCTATATCGGACGACTTCTCCGGGTGTATGCTGGACCGTGCGTCTTCATTGGc < 4:99050/148‑1 (MQ=255) cctgatccagcacatcggcactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccggccgccagcgcgaagccgtggacatggtttccaccgcattCCACTTCATTGGCGGTg < 1:16963‑M1/17‑1 (MQ=255) aCTGGGCCGATTGCTCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTg > 7:217375/1‑149 (MQ=255) ggCCGATTGCTCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGc < 8:217375/147‑1 (MQ=255) gCTCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTc < 7:78957/148‑1 (MQ=255) tCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTg > 2:1622/1‑149 (MQ=255) cGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTg > 2:91555/1‑148 (MQ=255) cactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccggccgccagcgcgaagccgtggacatggtttccaccgcattCCACTTCATTGGCGGTGGCGACCATTTCGTGGAAt > 2:16963‑M1/115‑149 (MQ=255) tCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGc > 3:228282/1‑149 (MQ=255) tCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGc > 3:105992/1‑149 (MQ=255) gTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCg < 7:259113/148‑1 (MQ=255) gCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTg < 4:228282/148‑1 (MQ=255) tAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGa > 6:94295/1‑148 (MQ=255) cagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccggccgccagcgcgaagccgtggacatggtttccaccgcattCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTg < 7:122678‑M1/41‑1 (MQ=255) cagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccggccgccagcgcgaagccgtggacatggtttccaccgcattCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTg > 8:122678‑M1/106‑146 (MQ=255) gcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccggccgccagcgcgaagccgtggacatggtttccaccgcattcc > 3:36702‑M1/104‑105 (MQ=255) gcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgacatggccgaggcggccggccgccagcgcgaagccgtggacatggtttccaccgcattcc < 4:36702‑M1/2‑1 (MQ=255) ggCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAAcc < 7:138463/149‑1 (MQ=255) cGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAAccgt < 1:109568/149‑3 (MQ=255) aCGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCAt < 6:272380/103‑1 (MQ=255) aCGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCAt > 5:272380/1‑103 (MQ=255) aCCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTcgcg > 8:187937/1‑149 (MQ=255) ccgccgCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTcgcg < 1:91555/148‑1 (MQ=255) ccgcATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTgg > 4:282446/1‑149 (MQ=255) ctgctgcCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCggccggcc < 3:322236/145‑1 (MQ=255) ctgctgcCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCt > 3:106560/1‑149 (MQ=255) cccTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCa > 4:264070/1‑149 (MQ=255) ccTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCAt < 3:282446/149‑1 (MQ=255) cTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCAt > 4:233979/1‑148 (MQ=255) cTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCAt < 3:233979/148‑1 (MQ=255) cTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATg > 6:65491/1‑149 (MQ=255) ttCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGt > 4:220851/1‑149 (MQ=255) gggCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTg < 3:216252/149‑1 (MQ=255) ctgGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGAcgcg < 7:187937/147‑1 (MQ=255) ccGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGa < 1:1622/149‑1 (MQ=255) ccGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTACACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCAAAGGAGACGCGGGtg > 7:50118/1‑146 (MQ=255) aTCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCggg < 7:204529/140‑1 (MQ=255) aTCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGAGGCCGGCCCCCTCGGCCATGTCACTGGAGCCGCCGGTAGatccg > 8:204529/1‑144 (MQ=255) tCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTAGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAgctgct > 6:264119/1‑149 (MQ=255) ggCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTgg > 6:14149/1‑149 (MQ=255) cTGCGCCGCCTGGCTTCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGc < 5:154592/149‑1 (MQ=255) cTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGc < 4:105992/149‑1 (MQ=255) gcgcCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCt > 1:121206/1‑148 (MQ=255) cgccgcCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTg < 6:64020/145‑1 (MQ=255) cgccgcCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTg > 5:64020/1‑145 (MQ=255) cgccTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGa < 2:8274/149‑1 (MQ=255) cgccTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGa > 2:80839/1‑149 (MQ=255) gccTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGAt < 3:220851/149‑1 (MQ=255) cTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCt < 4:106560/149‑1 (MQ=255) cAGGACCGTGCCACTTCATTGGCGGTAGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGgc < 5:264119/149‑1 (MQ=255) aGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGt < 3:309866/130‑1 (MQ=255) aGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGt > 4:309866/1‑130 (MQ=255) | TCCAGCTGTTGGATCGACTGGGCCGATTGCTCGATTTCGTGGCTAAGGCGATCAACGCTGTGTACCGCCGCATCGATCTGCTGCTGCCCTTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGC > NC_002947/681861‑682147 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |