New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	867935 =	30 (0.560)	4 (0.080)	4/234	NT	15.8%	intergenic (+33/+144)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	867995 =	16 (0.340)					intergenic (+93/+84)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase

CTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAG  >  NC_002947/867790‑868083                                                                                                                                                   |                                                                                                                                                     ccgataacgacgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGcc                                                                                                                                                    <  5:308948‑M1/3‑1 (MQ=255)     cctggacctggaCGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTc                                                                                                                                               <  2:99086/149‑1 (MQ=255)        cgacgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTccc                                                                                                                                             >  8:279033‑M1/140‑149 (MQ=255)         gacgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCca                                                                                                                                            >  3:285277‑M1/139‑149 (MQ=255)          acgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCca                                                                                                                                            <  5:9887‑M1/11‑1 (MQ=255)           cgcggccctggacctggcagagagcagcccggcggccaagcactacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCcaca                                                                                                                                          >  8:219714‑M1/137‑149 (MQ=255)                 cGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGcgaag                                                                                                                                             >  2:137657/1‑135 (MQ=255)                 cGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGcgaag                                                                                                                                             <  1:137657/139‑5 (MQ=255)                     aaGCACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGcgcc                                                                                                                               <  8:137732/149‑1 (MQ=255)                        gACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGgcgcgc                                                                                                                                                     <  1:223479/124‑1 (MQ=255)                        gACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGgcgcgc                                                                                                                                                     >  2:223479/1‑124 (MQ=255)                        gACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCa                                                                                                                            >  1:179178/1‑149 (MQ=255)                             gCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGAGAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGc                                                                                                                       >  7:236686/1‑149 (MQ=255)                                 ggCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCggg                                                                                                                    <  1:236855/149‑1 (MQ=255)                                 ggCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGc                                                                                                                   <  4:166951/149‑1 (MQ=255)                                 ggCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCCCACCCCCAGGGATCGCGCCGCACCAGCCGGc                                                                                                                   >  7:211869/1‑149 (MQ=255)                                   cAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCAt                                                                                                                 <  2:275862/149‑1 (MQ=255)                                      gACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGTGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTAc                                                                                                              <  1:122339/149‑1 (MQ=255)                                                gAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCtgtg                                                                                                    >  6:90569/1‑149 (MQ=255)                                                gAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGACTCGCGCCGCACCAGCCGGCATTACCGAACCggtg                                                                                                    >  4:232872/1‑149 (MQ=255)                                                      tacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAAc                                                                                                         >  8:183912‑M1/94‑139 (MQ=255)                                                      tacgcttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAAc                                                                                                         <  7:183912‑M1/46‑1 (MQ=255)                                                       ttGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCgg                                                                                             <  6:165940/149‑1 (MQ=255)                                                          cttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCggg                                                                                            <  1:10261‑M1/59‑1 (MQ=255)                                                          cttaagccggtctgaaacgcaaaaacgcccctcggggcgttttttgtgcctggcgcttgatcagcctgtaccgccctcttcgcgggcatGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCggg                                                                                            >  2:10261‑M1/90‑148 (MQ=255)                                                             aCCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGc                                                                                       <  5:102754/149‑1 (MQ=255)                                                             aCCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGc                                                                                       <  5:90569/149‑1 (MQ=255)                                                             aCCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGc                                                                                       >  5:274620/1‑149 (MQ=255)                                                                     aaTGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCtgtg                                                                                                    >  8:213592/1‑128 (MQ=255)                                                                     aaTGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCtgtg                                                                                                    <  7:213592/128‑1 (MQ=255)                                                                         ccccTGAGTACATCGATATAATCCATAAACCCCGTGGCTTATGTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAggg                                                                           <  8:223947/149‑1 (MQ=38)                                                                           ccTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCg                                                                         <  8:236686/149‑1 (MQ=255)                                                                                      cGACATCATCCATAAAGCCCGTGGAGGATCTGCAGCCAGTGCCGGCCGCTCC‑GCGGGCGCGCCCGCTCCCACAGCAGTCGCGCCGCACCGGCGGGCATTACCGACCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGa                                                              <  5:31324/149‑1 (MQ=38)                                                                                                gATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAgcgc                                                      >  5:76536/1‑147 (MQ=255)                                                                                                gATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCa                                                    <  6:274620/149‑1 (MQ=255)                                                                                                             gCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACg                                       <  3:232872/149‑1 (MQ=255)                                                                                                                      tAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGACTGATCAAGCGCCAGGCACAAAAAACGCCCCGAg                                <  7:30267/147‑1 (MQ=255)                                                                                                                      tAGCCAGTGCCGGCCTCTGC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCTCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAgg                                                  <  1:226622/129‑1 (MQ=255)                                                                                                                       aGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGAATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAggg                              <  2:179178/148‑1 (MQ=255)                                                                                                                               ccGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTg                     <  6:76536/149‑1 (MQ=255)                                                                                                                                    ctctTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGttt                <  3:310139/149‑1 (MQ=255)                                                                                                                                                   GCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAg  <  6:308948‑M1/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTC‑GCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAG  >  NC_002947/867790‑868083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.