New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1731163 =	9 (0.170)	5 (0.120)	5/208	NT	30.2%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1731255 =	16 (0.380)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase

GGGTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGC  >  NC_002947/1731015‑1731242                                                                                                                                                     |                                                                                ggggGACCGAGGGGCGACGGATCAGGCCGCAGGCCAGTGGAAGGGTAGGCGAGAGCTCGGCAGGGCCCGTAATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACgg                                                                                 <  8:52306/149‑1 (MQ=255)     gcgcttctgggtggcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggccttcctgtcgtcgctgaccaagcccgcagaaaaggctgccaaagcgaagcaggcttgaatttgcctgggccgacctgtgcaGccc                                                                              <  5:28611‑M1/4‑1 (MQ=255)      aCCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCAt                                                                            >  3:21405/1‑149 (MQ=255)       gcttctgggtggcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCAtt                                                                           <  3:318397‑M1/7‑1 (MQ=255)            gggCGACGGATCAGGTCGCAGGCCAGTTGTAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCgg                                                                      <  1:103035/149‑1 (MQ=255)              gtgACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCTGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCggg                                                                     >  2:36799/3‑148 (MQ=255)              ggtggcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTcgcg                                                                       >  3:250365‑M1/136‑146 (MQ=255)              ggtggcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGc                                                                    >  1:14165‑M1/136‑149 (MQ=255)              ggtggcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGc                                                                    >  1:35967‑M1/136‑149 (MQ=255)                  gcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGc                                                                <  6:283290‑M1/18‑1 (MQ=255)                  cGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGc                                                                <  4:21405/149‑1 (MQ=255)                                      gttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGca                                            <  8:28047‑M1/38‑1 (MQ=255)                                                         tCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCTGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCTCACAGGTACTGCACAGCTCTGAACGCCTGTGc                         <  1:36799/149‑1 (MQ=255)                                                         tCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCAACAGGAACTGCACAGCACTGAACGCCTGTGc                         >  4:136392/1‑149 (MQ=255)                                                                   ccttCATGGTGGACTGCGGTGCAAGTAATTGCTGGGAAATCTGAGTGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGACCATTCGCGGTAACGCCAGCTCCCACAGGTACTTCACATCTCTGAACGCCTGTGCCAAGCCGGTg               <  3:236944/146‑1 (MQ=255)                                                                    ggTCAGGGGGTACGCGGGGGCAAGGCACGGGGGTGAAATCTGAGGGGGGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTgg              <  3:136392/148‑1 (MQ=38)                                                                        ctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGc          >  7:28047‑M1/78‑149 (MQ=255)                                                                           ggggACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCgg        <  6:281130/148‑1 (MQ=255)                                                                             gtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcgGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGc      >  4:42210‑M1/73‑148 (MQ=255)                                                                                                gaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGc  <  7:222495‑M1/80‑1 (MQ=255)                                                                                                gaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGc  >  8:222495‑M1/54‑133 (MQ=255)                                                                                                                                                     |                                                                                GGGTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGC  >  NC_002947/1731015‑1731242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.