New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3186375 = | 46 (0.850) | 3 (0.060) | 3/248 | NT | 5.9% | coding (311/324 nt) | PP_2796 | hypothetical protein |
? | NC_002947 | 3186414 = | 53 (1.050) | coding (30/1659 nt) | actP‑II | acetate permease |
TGGCCCAGGGGTCGAACATGACCGTGGGCGTGGCTGCCGGCGCCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGT > NC_002947/3186228‑3186514 | gtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcag > 3:170242‑M1/148‑149 (MQ=255) gtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcag < 2:55585‑M1/2‑1 (MQ=255) tcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcag < 5:215566‑M1/2‑1 (MQ=255) gCCCAGGGGTCGAACATGACCGTGGGCGTGGCTGCCGGCGCCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAgaggag < 7:188298/147‑1 (MQ=255) gCCCAGGGGTCGAACATGACCGTGGGCGTGGCTGCCGGCGCCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTAAGCGGGCTGGAAgaggag > 7:109024/1‑147 (MQ=255) ccAGGGGTCGAACATGACCGTGGGCGTGGCTGCCGGCGCCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAgg > 1:323766/1‑149 (MQ=255) gcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcAGCAggg < 6:81126‑M1/7‑1 (MQ=255) gTCGAACATGACCGTGGGCGTGGCTGCCGGCGCATTCCTGTTCGTGTTCTTCTGTGGGTTGTCGGCGTTCTACGTGTAACGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCAt > 7:257860/1‑149 (MQ=255) cacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgc > 2:33931‑M1/112‑149 (MQ=255) gcgcCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgctgc < 4:17444/149‑1 (MQ=255) cgcCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGGCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgctgct < 8:109024/149‑1 (MQ=255) ggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgctg < 1:341298‑M1/40‑1 (MQ=255) ggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgctg > 2:341298‑M1/107‑146 (MQ=255) gcgttCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgctgctg < 8:84705/146‑1 (MQ=255) cTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCa > 6:38675/1‑149 (MQ=255) gTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAgg > 5:296708/1‑149 (MQ=255) gTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAgg > 4:314829/1‑149 (MQ=255) gtgtTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGAGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCctg > 1:76164/1‑149 (MQ=255) ttctGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCctgctgctg > 3:51370/1‑149 (MQ=255) tgCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttc > 2:102174/1‑149 (MQ=255) gTTGTCGGCGTTCTACGTGTACCGTGCCAATGGCGAGGTCGATTGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTGTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgcc < 8:257860/149‑1 (MQ=255) gTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCctgctgc < 3:296023/136‑1 (MQ=255) gTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCctgctgc > 4:296023/1‑136 (MQ=255) tCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAGCTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgccttcg > 7:155218/1‑149 (MQ=255) ggCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgccttc > 6:275244/1‑146 (MQ=255) ggCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgccttc < 5:275244/146‑1 (MQ=255) gTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGAGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTATGGCCATGCTGCTGCACTCACGCCTGCTGCTGGCTTCGCCTTCGCTCGa > 7:278233/1‑149 (MQ=255) cTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGc > 4:62828/1‑149 (MQ=255) tgtACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGgtc < 3:62828/149‑1 (MQ=255) ggCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCCCTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGCCGCTGgtcagcgt > 8:60105/1‑147 (MQ=255) cGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTTCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGc < 7:60105/148‑1 (MQ=255) gATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGa < 2:7884/118‑1 (MQ=255) gATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGa > 1:7884/1‑118 (MQ=255) gATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCa < 5:38675/148‑1 (MQ=255) gATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCAt < 4:51370/149‑1 (MQ=255) aTAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATg > 5:174153/1‑149 (MQ=255) aGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgccttcgc > 2:296398/1‑111 (MQ=255) aGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgccttcgc < 1:296398/111‑1 (MQ=255) gCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGcc < 6:296708/148‑1 (MQ=255) tGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCt < 7:100329/138‑1 (MQ=255) tGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCt > 8:100329/1‑138 (MQ=255) tGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCt > 2:149717/1‑138 (MQ=255) tGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCt < 1:149717/138‑1 (MQ=255) tGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCg > 7:181819/1‑149 (MQ=255) aCCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCg < 2:76164/147‑1 (MQ=255) cccAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCa < 8:181819/149‑1 (MQ=255) ccAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCAt > 2:151659/1‑149 (MQ=255) gctgctCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCAt > 5:298350/1‑149 (MQ=255) ctgctCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATg < 2:323766/149‑1 (MQ=255) gctCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGgt > 6:289269/1‑149 (MQ=255) gtCAGCGGGCTGGAAGAGGATGAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCTTGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATTCCATCGGCATGTTGATGgtg < 8:278233/148‑1 (MQ=255) ctCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGgt < 1:151659/148‑1 (MQ=255) aGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAGCTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGgtgt < 8:155218/147‑1 (MQ=255) cGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGt > 1:55585/1‑149 (MQ=255) tGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTGAAGGGTGTTCGTGCTGt > 6:236197/1‑149 (MQ=255) agagGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCAt < 6:191719/114‑1 (MQ=255) agagGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCAt > 5:191719/1‑114 (MQ=255) gaggagCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAAc < 6:130998/107‑1 (MQ=255) gaggagCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAAc > 5:130998/1‑107 (MQ=255) | TGGCCCAGGGGTCGAACATGACCGTGGGCGTGGCTGCCGGCGCCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGT > NC_002947/3186228‑3186514 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |