New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3186375 =46 (0.850)3 (0.060) 3/248 NT 5.9% coding (311/324 nt) PP_2796 hypothetical protein
?NC_002947 3186414 = 53 (1.050)coding (30/1659 nt) actP‑II acetate permease

TGGCCCAGGGGTCGAACATGACCGTGGGCGTGGCTGCCGGCGCCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGT  >  NC_002947/3186228‑3186514
                                                                                                                                                   |                                                                                                                                           
gtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcag                                                                                                                                            >  3:170242‑M1/148‑149 (MQ=255)
gtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcag                                                                                                                                            <  2:55585‑M1/2‑1 (MQ=255)
 tcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcag                                                                                                                                            <  5:215566‑M1/2‑1 (MQ=255)
  gCCCAGGGGTCGAACATGACCGTGGGCGTGGCTGCCGGCGCCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAgaggag                                                                                                                                            <  7:188298/147‑1 (MQ=255)
  gCCCAGGGGTCGAACATGACCGTGGGCGTGGCTGCCGGCGCCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTAAGCGGGCTGGAAgaggag                                                                                                                                            >  7:109024/1‑147 (MQ=255)
    ccAGGGGTCGAACATGACCGTGGGCGTGGCTGCCGGCGCCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAgg                                                                                                                                        >  1:323766/1‑149 (MQ=255)
     gcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcAGCAggg                                                                                                                                       <  6:81126‑M1/7‑1 (MQ=255)
          gTCGAACATGACCGTGGGCGTGGCTGCCGGCGCATTCCTGTTCGTGTTCTTCTGTGGGTTGTCGGCGTTCTACGTGTAACGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCAt                                                                                                                                  >  7:257860/1‑149 (MQ=255)
                                    cacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgc                                                                                                        >  2:33931‑M1/112‑149 (MQ=255)
                                       gcgcCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgctgc                                                                                                     <  4:17444/149‑1 (MQ=255)
                                        cgcCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGGCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgctgct                                                                                                    <  8:109024/149‑1 (MQ=255)
                                         ggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgctg                                                                                                      <  1:341298‑M1/40‑1 (MQ=255)
                                         ggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagcgtcgagcgaaggcgaagccagcagcaggcctgagtgcagcAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgctg                                                                                                      >  2:341298‑M1/107‑146 (MQ=255)
                                         gcgttCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCctgctgctg                                                                                                   <  8:84705/146‑1 (MQ=255)
                                           cTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCa                                                                                                 >  6:38675/1‑149 (MQ=255)
                                                 gTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAgg                                                                                           >  5:296708/1‑149 (MQ=255)
                                                 gTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAgg                                                                                           >  4:314829/1‑149 (MQ=255)
                                                     gtgtTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGAGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCctg                                                                                       >  1:76164/1‑149 (MQ=255)
                                                           ttctGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCctgctgctg                                                                                 >  3:51370/1‑149 (MQ=255)
                                                                tgCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttc                                                                            >  2:102174/1‑149 (MQ=255)
                                                                   gTTGTCGGCGTTCTACGTGTACCGTGCCAATGGCGAGGTCGATTGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTGTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgcc                                                                         <  8:257860/149‑1 (MQ=255)
                                                                      gTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCctgctgc                                                                                   <  3:296023/136‑1 (MQ=255)
                                                                      gTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCctgctgc                                                                                   >  4:296023/1‑136 (MQ=255)
                                                                       tCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAGCTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgccttcg                                                                     >  7:155218/1‑149 (MQ=255)
                                                                         ggCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgccttc                                                                      >  6:275244/1‑146 (MQ=255)
                                                                         ggCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgccttc                                                                      <  5:275244/146‑1 (MQ=255)
                                                                            gTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGAGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTATGGCCATGCTGCTGCACTCACGCCTGCTGCTGGCTTCGCCTTCGCTCGa                                                                >  7:278233/1‑149 (MQ=255)
                                                                               cTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGc                                                             >  4:62828/1‑149 (MQ=255)
                                                                                    tgtACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGgtc                                                        <  3:62828/149‑1 (MQ=255)
                                                                                           ggCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCCCTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGCCGCTGgtcagcgt                                                   >  8:60105/1‑147 (MQ=255)
                                                                                                          cGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTTCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGc                                   <  7:60105/148‑1 (MQ=255)
                                                                                                           gATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGa                                                                <  2:7884/118‑1 (MQ=255)
                                                                                                           gATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGa                                                                >  1:7884/1‑118 (MQ=255)
                                                                                                           gATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCa                                  <  5:38675/148‑1 (MQ=255)
                                                                                                           gATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCAt                                 <  4:51370/149‑1 (MQ=255)
                                                                                                            aTAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATg                                >  5:174153/1‑149 (MQ=255)
                                                                                                              aGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgccttcgc                                                                    >  2:296398/1‑111 (MQ=255)
                                                                                                              aGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGcttcgccttcgc                                                                    <  1:296398/111‑1 (MQ=255)
                                                                                                               gCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGcc                              <  6:296708/148‑1 (MQ=255)
                                                                                                                  tGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCt                                     <  7:100329/138‑1 (MQ=255)
                                                                                                                  tGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCt                                     >  8:100329/1‑138 (MQ=255)
                                                                                                                  tGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCt                                     >  2:149717/1‑138 (MQ=255)
                                                                                                                  tGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCt                                     <  1:149717/138‑1 (MQ=255)
                                                                                                                  tGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCg                          >  7:181819/1‑149 (MQ=255)
                                                                                                                    aCCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCg                          <  2:76164/147‑1 (MQ=255)
                                                                                                                     cccAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCa                       <  8:181819/149‑1 (MQ=255)
                                                                                                                      ccAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCAt                      >  2:151659/1‑149 (MQ=255)
                                                                                                                            gctgctCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCAt                >  5:298350/1‑149 (MQ=255)
                                                                                                                             ctgctCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATg               <  2:323766/149‑1 (MQ=255)
                                                                                                                               gctCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGgt             >  6:289269/1‑149 (MQ=255)
                                                                                                                                gtCAGCGGGCTGGAAGAGGATGAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCTTGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATTCCATCGGCATGTTGATGgtg            <  8:278233/148‑1 (MQ=255)
                                                                                                                                ctCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGgt             <  1:151659/148‑1 (MQ=255)
                                                                                                                                   aGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAGCTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGgtgt           <  8:155218/147‑1 (MQ=255)
                                                                                                                                     cGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGt       >  1:55585/1‑149 (MQ=255)
                                                                                                                                          tGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTGAAGGGTGTTCGTGCTGt  >  6:236197/1‑149 (MQ=255)
                                                                                                                                              agagGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCAt                                 <  6:191719/114‑1 (MQ=255)
                                                                                                                                              agagGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCAt                                 >  5:191719/1‑114 (MQ=255)
                                                                                                                                               gaggagCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAAc                                       <  6:130998/107‑1 (MQ=255)
                                                                                                                                               gaggagCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAAc                                       >  5:130998/1‑107 (MQ=255)
                                                                                                                                                   |                                                                                                                                           
TGGCCCAGGGGTCGAACATGACCGTGGGCGTGGCTGCCGGCGCCTTCCTGTTCGTGTTCTTCTGTGCGTTGTCGGCGTTCTACGTGTACCGGGCCAATGGCGAGTTCGATAGCCTGACCCAGGCGCTGCTCAGCGGGCTGGAAGAGGAGCAGGGCGCATGAAAAAACTCGTACCTCTGGCCCTGCTGCTGCACTCAGGCCTGCTGCTGGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGT  >  NC_002947/3186228‑3186514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.