New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4577950	39 (0.720)	3 (0.060)	3/252	NT	6.7%	coding (2161/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
	?	NC_002947	= 4577984	46 (0.900)					coding (2127/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme

CCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGCCAACGCTCGCCGAACGGCACGCCAATGCGGTAACCCTCAC  >  NC_002947/4577802‑4578096                                                                                                                                                     |                                                                                                                                                   ccccTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAG                                                                                                                                                    >  5:201731‑M1/1‑149 (MQ=255) catcttcGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAG                                                                                                                                                    <  2:247192‑M1/146‑1 (MQ=255)   ccTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGt                                                                                                                                                   >  1:329377‑M1/1‑147 (MQ=255)    cTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGa                                                                                                                                                 >  7:137045/1‑149 (MQ=255)        gcgGGTAAACCGGCTCCTACACGGGTCACCGCGGGGTGCGGTGCCTGCGTAGGAACGGGTCTCTCGCGAAAGGTCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAAt                                                                                                                                             <  5:188292/149‑1 (MQ=255)         ggggTAAAGCCGCTCCTTCACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGTGCCAGTACAGCCATCCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATg                                                                                                                                            <  3:15210/148‑1 (MQ=255)                aCCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGccc                                                                                                                                     >  8:280025/1‑149 (MQ=255)                        cTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGtggct                                                                                                                               <  6:201731/147‑1 (MQ=255)                          acacGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGtggctggc                                                                                                                            >  6:230500/1‑148 (MQ=255)                              gggTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACtt                                                                                                                       >  3:136816/1‑149 (MQ=255)                               gctCAGCGGCGGGTGCGTTGCCTGCGTAGTAACGGGTCTCCCGCGAAAGTGCCAGTACAGCCAACCGATGAGGCGGGCTTCATGATCAAGACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCGACTTc                                                                                                                      <  8:216929/147‑1 (MQ=255)                                 tCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGt                                                                                                                    <  2:152390/149‑1 (MQ=255)                                      gccgGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCActg                                                                                                               >  7:280025‑M2/1‑146 (MQ=255)                                         gggTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGtgacgaagtggccagccacgggcagccattatcgctggcc                                                                                                            <  2:329377‑M1/149‑41 (MQ=255)                                                         tAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGc                                                                                            <  1:147728/149‑1 (MQ=255)                                                            gAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGa                                                                                         <  5:230500/149‑1 (MQ=255)                                                                gggTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGACAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGTCCACCGCCCCGAGATTGCCGACAtt                                                                                     <  4:5008/149‑1 (MQ=255)                                                                 ggTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGa                                                                                         >  8:40565/1‑144 (MQ=255)                                                                 ggTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGa                                                                                         <  7:40565/144‑1 (MQ=255)                                                                     tcCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCCCCGCCCCGACATTGCCGACATTCGAcc                                                                                >  8:281157/1‑149 (MQ=255)                                                                     tcCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGAcc                                                                                >  7:263440/1‑149 (MQ=255)                                                                       ccGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCActg                                                                                                               <  4:202653‑M2/116‑4 (MQ=255)                                                                       ccGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCActg                                                                                                               >  3:202653‑M2/1‑113 (MQ=255)                                                                       ccGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCg                                                                              >  2:120923/1‑149 (MQ=255)                                                                       ccGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGACTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCg                                                                              >  2:161317/1‑149 (MQ=255)                                                                           gAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGcc                                                                                           >  5:12143/1‑132 (MQ=255)                                                                           gAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGcc                                                                                           <  6:12143/132‑1 (MQ=255)                                                                                   ctgTACAGCCAACCGACAAGGCGGGCTTCATGCTCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCg                                                                  <  7:250883/147‑1 (MQ=255)                                                                                       aCAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTc                                                                                    <  2:62016/127‑1 (MQ=255)                                                                                         aGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGtgacgaagtggccagccacgggcagccattatcgctggccc                                                                                                           >  5:35932‑M1/1‑61 (MQ=255)                                                                                         aGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGtgacgaagtggccagccacgggcagccattatcgctggccc                                                                                                           <  6:35932‑M1/102‑42 (MQ=255)                                                                                           ccAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACt                                                          <  4:136816/149‑1 (MQ=255)                                                                                           ccAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACt                                                          <  4:172523/149‑1 (MQ=255)                                                                                            cAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTg                                                         <  2:8981/149‑1 (MQ=255)                                                                                              aCCGATCAGGCGGGCTTCATGATCAACACCCCCACCGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGtt                                                       <  8:137045/149‑1 (MQ=255)                                                                                                 gATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGtt                                                       >  5:157596/1‑146 (MQ=255)                                                                                                   tCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGaa                                                  <  8:263440/149‑1 (MQ=255)                                                                                                       gCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTc                                              <  5:347605/149‑1 (MQ=255)                                                                                                             ttCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATAc                                                                        <  6:78833/117‑1 (MQ=255)                                                                                                             ttCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGcc                                         >  5:100703/1‑148 (MQ=255)                                                                                                                aTGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGCCAACg                                     >  8:105436/1‑149 (MQ=255)                                                                                                                aTGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGCCAACg                                     >  5:275526/1‑149 (MQ=255)                                                                                                                  gATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGCCAACGCt                                   >  3:138847/1‑149 (MQ=255)                                                                                                                   aTCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGCCAACGCTc                                  <  4:138847/149‑1 (MQ=255)                                                                                                                           ccccAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGc                                          <  8:203189/133‑1 (MQ=255)                                                                                                                           ccccAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCAGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGc                                          >  7:203189/1‑133 (MQ=255)                                                                                                                               aaCGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGCCAACGCTCGCCGAACGGCAc                      <  6:100703/149‑1 (MQ=255)                                                                                                                                            tCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGCCAACGCTCGCCGAACGGCACGCCAATGCGGTaa         >  8:45661/1‑149 (MQ=255)                                                                                                                                             cAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGCCAACGCTCGCCGAACGGCACGCCAATGCGGTAAc        >  6:143434/1‑149 (MQ=255)                                                                                                                                               gggCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCActggccctgaacctgccgccgttgggggtgttgatcatgaagcccgcctgatcggttggct                                                     <  6:35932‑M2/102‑62 (MQ=255)                                                                                                                                               gggCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCActggccctgaacctgccgccgttgggggtgttgatcatgaagcccgcctgatcggttggct                                                     >  5:35932‑M2/1‑41 (MQ=255)                                                                                                                                                ggCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCActggccctgaacctgccgccgttgggggtgttgatcatgaagcccgcctgatcggttggctgtactggccctttcgcgggagacccgttcctacgcaggcaccgcaccc     <  2:329377‑M2/149‑110 (MQ=255)                                                                                                                                                  ccAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGCCAACGCTCGCCGAACGGCACGCCAATGCGGTAACCCTCa   >  4:279837/1‑149 (MQ=255)                                                                                                                                                   cAGtgacgaagtggccagccacgggcagccattatcgctggccctgaacctgccgccgttgggggtgttgatcatgaagcccgcctgatcggttggctgtactggccctttcgcgggagacccgttcctacgcaggcaccgcacccggc  >  7:280025‑M1/1‑3 (MQ=255)                                                                                                                                                   cAGtgacgaagtggccagccacgggcagccattatcgctggccctgaacctgccgccgttgggggtgttgatcatgaagcccgcctgatcggttggctgtactggccctttcgcgg                                   <  4:202653‑M1/116‑114 (MQ=255)                                                                                                                                                   cAGtgacgaagtggccagccacgggcagccattatcgctggccctgaacctgccgccgttgggggtgttgatcatgaagcccgcctgatcggttggctgtactggccctttcgcgg                                   >  3:202653‑M1/1‑3 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGCTGGCCACTTCGTCACTGGCCACCGCCCCGAGATTGCCGACATTCGACCCGGCATACAGCTCGGCATCACTGTTCAGAAGCTCCTGCCAACGCTCGCCGAACGGCACGCCAATGCGGTAACCCTCAC  >  NC_002947/4577802‑4578096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.