New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4586034 =	22 (0.410)	4 (0.090)	4/220	NT	24.0%	intergenic (+117/+98)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586105 =	7 (0.160)					intergenic (+188/+27)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

CCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GGTAAACCCGCTCCTAC‑CAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG  >  NC_002947/4585888‑4586180                                                                                                                                                    |                                                                                                                                                      aaggtgccgcggtatatacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcggg                                                                                                                                                      <  3:54911‑M1/2‑1 (MQ=255)  cgAGCCAGGAGCCACCGGGGAAGTCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGACAGGTTGAGGATGACCGGGGGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGC‑gggt                                                                                                                                                    <  2:204733/149‑3 (MQ=255)      ccAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAAc                                                                                                                                                 >  6:152351/1‑149 (MQ=255)          cggtatatacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGc                                                                                                                                             >  6:304143‑M1/139‑149 (MQ=255)          cggtatatacgttttggcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGc                                                                                                                                             >  7:115483‑M1/139‑149 (MQ=255)             ccACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                                                                          <  4:311807/149‑1 (MQ=255)               aCCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTa                                                                                                                                        >  3:39066/1‑149 (MQ=255)                 tacgttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgagtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTAc                                                                                                                                       <  5:122518‑M1/17‑1 (MQ=255)                    gttttgtcgacgagtacccgatgaccgtgaccggcaaggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTAC‑CAgg                                                                                                                                  <  6:211183‑M1/21‑1 (MQ=255)                             aaGGGTAGACCACGGCACCGGCGTGAACAGCTGCTCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGA‑ccgtgc                                                                                                                         <  7:308999/148‑6 (MQ=38)                                      ccACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGa                                                                                                                <  7:176383/148‑1 (MQ=39)                                           gCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATgcgg                                                                                                          <  5:117995/149‑1 (MQ=39)                                            cACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATgcggc                                                                                                         >  4:320784/1‑149 (MQ=39)                                                 gCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGc                                                                                                    <  3:320784/149‑1 (MQ=39)                                                        cAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGt                                                                                             <  4:13029/149‑1 (MQ=39)                                                        aggtgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTAC‑CAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGt                                                                                             >  5:211183‑M1/93‑149 (MQ=255)                                                         aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTa                                                                                            <  3:55379/149‑1 (MQ=39)                                                           tgcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgggctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTAC‑CAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAgg                                                                                          >  1:272870‑M1/90‑149 (MQ=255)                                                            tGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGA‑c                                                                                                                              >  7:78360/1‑112 (MQ=38)                                                            tGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGA‑c                                                                                                                              <  8:78360/112‑1 (MQ=38)                                                            gcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTAC‑CAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTgg                                                                                              >  4:276774‑M1/89‑144 (MQ=255)                                                            gcagaagttccgcatgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgGGTAAACCCGCTCCTAC‑CAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTgg                                                                                              <  3:276774‑M1/56‑1 (MQ=255)                                                                   ggctgctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCggg                                                                                    <  1:154665/146‑1 (MQ=38)                                                                   cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCggg                                                                                    <  1:147132/147‑1 (MQ=38)                                                                   cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg                                                                                     <  7:161366/146‑1 (MQ=38)                                                                   cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg                                                                                     <  2:280382/146‑1 (MQ=38)                                                                        ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTAc                                                                               <  5:152351/147‑1 (MQ=38)                                                                        ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTACCGGCCTTGAATGCGGCGCTGCCCCTGGTAg                                                                                           >  7:261263/1‑135 (MQ=38)                                                                        ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTACCGGCCTTGAATGCGGCGCTGCCCCTGGTAg                                                                                           <  8:261263/135‑1 (MQ=38)                                                                                          gATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCggg                                                                                    <  5:146871/124‑1 (MQ=37)                                                                                          gATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑CAGGGACC‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCggg                                                                                    >  6:146871/1‑124 (MQ=37)                                                                                                               gTGAAGATCTTGCATTGATCGGGCCGGCCTCTTAGCGGGTAAAACCCCTACTACACGGGGC‑C‑CTGGCCGCCTTGGATTGGGCGCGGGCCCTGGTATGAGCGGGTTTTACCGCGAATAGGCCGGCCCCGCCCGCACAGCAACCCCCac                                        >  2:232357/1‑146 (MQ=255)                                                                                                                                                 gcgGGTAAACCCGCTCCTAC‑CAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTg                                                                                               >  4:159475‑M1/4‑58 (MQ=255)                                                                                                                                                   gGGTAAACCCGCTCCTAC‑CAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATg  <  3:297045‑M1/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GGTAAACCCGCTCCTAC‑CAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATG  >  NC_002947/4585888‑4586180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.