New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	0 (0.000)	19 (0.390)	18/240	NT	42.2%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	52 (1.060)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGA  >  NC_002947/4808032‑4808326                                                                                                                                                    |                                                                                                                                                    gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgcg                                                                                                                                                     <  5:86088‑M1/6‑1 (MQ=255)      tttcgggccagttattcctgagggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattgcccagaaacaaacgtaggagcgggtttaCCCGCGAAgcgc                                                                                                                                               <  4:151183‑M1/12‑1 (MQ=255)       ttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGcgcc                                                                                                                                              <  8:73623‑M1/13‑1 (MQ=255)        tcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGcgcc                                                                                                                                              >  4:38614‑M1/136‑148 (MQ=255)              cagtcattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcggg                                                                                                                                       <  4:57191‑M1/20‑1 (MQ=255)                          tgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGa                                                                                                                             >  3:57191‑M1/118‑147 (MQ=255)                             cttgtagGTTTTTGGCGGTAGTTTTGCAGCGCCTGGTAGGTGTTCGCCGGGTGTTTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctac                                                                                                                        <  2:304822‑M1/146‑30 (MQ=255)                                          accgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGaaaa                                                                                                           <  5:287965‑M1/48‑1 (MQ=255)                                           gCGGGATGTTTTCTGCGGCTGGCAGGTGTTCGGCGGGGTTTTTTCAGCGCCTGGGAGGTGGTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggc                                                                                                           <  8:58388‑M1/148‑43 (MQ=255)                                           gCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggc                                                                                                           >  3:311534‑M1/1‑106 (MQ=255)                                               cttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAAtcctc                                                                                                      >  6:287965‑M1/97‑149 (MQ=255)                                                    tttCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcc                                                                                                 >  1:5657‑M1/1‑97 (MQ=255)                                                     gcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggacgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCa                                                                                                 <  4:128215‑M1/58‑1 (MQ=255)                                                         gtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCaaa                                                                                               >  3:259896‑M1/87‑146 (MQ=255)                                                         gtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCaaa                                                                                               <  4:259896‑M1/60‑1 (MQ=255)                                                             cTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatt                                                                                        >  1:135815‑M1/1‑88 (MQ=255)                                                                tatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCaaaa                                                                                     >  3:128215‑M1/80‑149 (MQ=255)                                                                tatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCaaaa                                                                                     <  6:156348‑M1/70‑1 (MQ=255)                                                                   cgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTc                                                                                  <  4:1039‑M1/73‑1 (MQ=255)                                                                             aaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTc                                                                        >  5:156348‑M1/67‑149 (MQ=255)                                                                                     ttCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcat                                                                 <  3:226842‑M1/148‑85 (MQ=255)                                                                                      tCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgt                                                               >  1:339750‑M1/1‑63 (MQ=255)                                                                                         cgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTc                                                            >  3:1039‑M1/55‑149 (MQ=255)                                                                                            gcgcgactggtgcaggagggactggccgaaacaaccgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGGCCACTCAAAAttccca                                                         <  5:153103‑M1/98‑3 (MQ=255)                                                                                             cTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgata                                                        >  3:270966‑M1/1‑56 (MQ=255)                                                                                               cgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCaaa                                                                <  6:36620‑M1/91‑1 (MQ=255)                                                                                               cgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCaaa                                                                >  5:36620‑M1/49‑139 (MQ=255)                                                                                                  ctggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCaacgcctc                                                   >  2:253156‑M1/46‑147 (MQ=255)                                                                                                      tgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAAAGCCGTCCACTCAAAATTCCAACGACGccccc                                               <  6:46143‑M1/108‑1 (MQ=255)                                                                                                      gtTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcg                                                >  5:72408‑M1/1‑47 (MQ=255)                                                                                                         cGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtac                                             <  7:24569‑M1/148‑105 (MQ=255)                                                                                                               gagaGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaag                                      <  2:339750‑M1/149‑112 (MQ=255)                                                                                                                agagTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaagg                                     <  4:150868‑M1/149‑113 (MQ=255)                                                                                                                agagTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaagg                                     >  3:150868‑M1/1‑37 (MQ=255)                                                                                                                 gagTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaaccctctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggc                                    <  5:252209‑M1/149‑114 (MQ=255)                                                                                                                 gagTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaac                                         <  6:154511‑M1/144‑109 (MQ=255)                                                                                                                 gagTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaac                                         >  5:154511‑M1/1‑36 (MQ=255)                                                                                                                    tttCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggt                                 >  7:266041‑M1/1‑33 (MQ=255)                                                                                                                      tCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtc                                <  4:311534‑M1/148‑118 (MQ=255)                                                                                                                      cgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAATCACCTCAAAATTCCAACGCCGTCCACTCAAGATTCCAACGCAGCCCCGTCAAATTTCCAGcgcc                               <  6:323621‑M1/124‑1 (MQ=255)                                                                                                                         gcgcCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgc                            <  8:266041‑M1/149‑122 (MQ=255)                                                                                                                                    gagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCACCCCCGCCTCCCCtcgca                  <  6:222953‑M1/137‑3 (MQ=255)                                                                                                                                      gcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAAAACCAACGCCGCCCCCTCAAAATACCAACACCTCCACCCCTCCAAAAt               <  6:8017‑M1/140‑1 (MQ=255)                                                                                                                                          cgccgcCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagg           <  8:33230‑M1/149‑139 (MQ=255)                                                                                                                                               cccgcGcggcgagtcgctggtaaacccgctcctacgtttgtttcggtccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattg      <  8:233340‑M1/149‑144 (MQ=255)                                                                                                                                                ccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatc                                                      >  2:272611‑M1/1‑5 (MQ=255)                                                                                                                                                ccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatc                                                      <  1:272611‑M1/100‑96 (MQ=255)                                                                                                                                                ccgcGAAGCGCCGCGCGGGCGTAGCTAGATCTCACAGGCGCTTAAAATCCTCCTGCAAACACCTCAAAATACAAACGCCTTCCCCTCAAAATTCAAACGCCGCCCCCTCAAAATTCCAACTCCGCCTCCCCTCGAAAATCcaacaacaa     <  6:153103/149‑1 (MQ=255)                                                                                                                                                 cgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccggttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggc    <  1:212995‑M1/149‑146 (MQ=255)                                                                                                                                                  GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGACGCCTCCCCTcgaaact               <  6:26962‑M1/137‑3 (MQ=255)                                                                                                                                                   cgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggtca  <  7:246915‑M1/149‑148 (MQ=255)                                                                                                                                                   cgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggcca  <  1:58139‑M1/149‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGA  >  NC_002947/4808032‑4808326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.