New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4914034 =	47 (0.870)	3 (0.060)	3/258	NT	5.9%	coding (665/1989 nt)	ccmF	holocytochrome c synthetase
	?	NC_002947	4914078 =	50 (0.950)					coding (621/1989 nt)	ccmF	holocytochrome c synthetase

GGTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAG  >  NC_002947/4913886‑4914176                                                                                                                                                     |                                                                                                                                               ggTCACCGCCAGCGAGTGGTTCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAg                                                                                                                                                >  8:273929/1‑149 (MQ=255)  gtgccgaccgatggccgtgacctcaacccgctgttgcaggactttggcctgatcgttcacccacccatgctctacatgggctatgtgggcttctcggtggctttcgcgttcgccattgccgccttgctcggcggccggctggacgctGc                                                                                                                                               <  6:150866‑M1/2‑1 (MQ=255)  gtgccgaccgatggccgtgacctcaacccgctgttgcaggactttggcctgatcgttcacccacccatgctctacatgggctatgtgggcttctcggtggctttcgcgttcgccattgacgccttgctcggcggccggctggacgctGc                                                                                                                                               >  1:30216‑M1/148‑149 (MQ=255)  gTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGc                                                                                                                                               <  2:170350/149‑1 (MQ=255)                       ctcaacccgctgttgcaggactttggcctgatcgttcacccacccatgctctacatgggctatgtgggcttctcggtggctttcgcgttcgccattgccgccttgctcggcggccggctggacgctGc                                                                                                                                               >  6:270662‑M1/127‑128 (MQ=255)                        gTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGc                                                                                                                         >  5:322856/1‑149 (MQ=255)                              tGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGAc                                                                                                                   <  3:279834/149‑1 (MQ=255)                                cccACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGAc                                                                                                                   >  2:46809/1‑147 (MQ=255)                                  caccaGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCCACACCCAGGAAAGCCCAGGcgacga                                                                                                                                    >  6:309641/1‑128 (MQ=255)                                  caccaGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAgc                                                                                                               >  4:213294/1‑149 (MQ=255)                                   acaaGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCACAGGTGATGCCAAGACACAGGAAAGCCCAGGCGACGAAGGTCCACGGCCGCGCACAgcg                                                                                                              >  8:219016/4‑149 (MQ=255)                                     caGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAgcgcg                                                                                                            <  3:213294/149‑1 (MQ=255)                                      aGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAgcgcgc                                                                                                           <  6:38701/149‑1 (MQ=255)                                      aGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAgcgcgc                                                                                                           >  5:38701/1‑149 (MQ=255)                                        ccAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGcc                                                                                                          >  1:194540/1‑148 (MQ=255)                                          aaGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAg                                                                                                       >  7:193503/1‑149 (MQ=255)                                            ggCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCACAGCCCAGTTCGTAGTAGGCCCACAACGACCCCAACCTGATGCCAACACCCAGGAAAGCCCAGGCGACGAAGGTCCACGGCCGCGACCAGCGCGCCCAgg                                                                                                      >  1:181898/1‑148 (MQ=255)                                               aTGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGCCCCCAACGTGATGCCAACACCCAGGAAAGCCCAGGCCACGATGGTCCACGGCCGCGACCAGCGCCCCCCGGCAGc                                                                                                  >  1:321040/1‑149 (MQ=255)                                                gcctgatcgttcacccacccatgctctacatgggctatgtgggcttctcggtggctttcgcgttcgccattgccgccttgctcggcggccggctggacgctGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGc                                                                                                  >  1:158586‑M1/102‑148 (MQ=255)                                                  ctgatcgttcacccacccatgctctacatgggctatgtgggcttctcggtggctttcgcgttcgccattgccgccttgctcggcggccggctggacgctGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCa                                                                                                    >  1:59899‑M1/100‑144 (MQ=255)                                                  ctgatcgttcacccacccatgctctacatgggctatgtgggcttctcggtggctttcgcgttcgccattgccgccttgctcggcggccggctggacgctGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCa                                                                                                    <  2:59899‑M1/45‑1 (MQ=255)                                                     gAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAg                                                                                            <  1:46809/149‑1 (MQ=255)                                                         cGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAgccgg                                                                                        <  6:6472/149‑1 (MQ=255)                                                                   cGGGTCCCAGAACAACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACCACCCCAAGGTGATGCCGACACCCACGAAAGCCCAGGCGACGAAGGTCCACGCCCGCGACCAGCCCGCCCAGGCAGCGTCCAGCCCGCCCCCGacc                                                                               >  7:78074/1‑146 (MQ=255)                                                                    gggTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCAAGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGc                                                                               >  1:84168/1‑147 (MQ=255)                                                                         ccAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAggcgg                                                                        >  6:32382/1‑149 (MQ=255)                                                                          cAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGACAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAggcgg                                                                        >  1:268072/1‑148 (MQ=255)                                                                             aaCCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCTTGCTCggcggccgg                                                                    <  4:254205/149‑4 (MQ=255)                                                                               ccaccaGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATgg                                                                  <  7:273929/149‑1 (MQ=255)                                                                               ccaccaGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGCCGACGATGGTCCACGGCCGCGACCCGCCCGCCCAGGCAGCGTCCAGCCGACCGCCGAGCAAGGCCGCAAtcg                                                                  >  5:337110/1‑147 (MQ=255)                                                                                caccaGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGt                                                                                                >  8:118169/1‑118 (MQ=255)                                                                                caccaGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGt                                                                                                <  7:118169/118‑1 (MQ=255)                                                                                caccaGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGACGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGc                                                                 >  5:150866/1‑149 (MQ=255)                                                                                    aGCCACCCCTGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGAGGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGTCGAAc                                                             <  2:181898/149‑1 (MQ=255)                                                                                          cccagcccagTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGa                                                         >  2:986/1‑147 (MQ=255)                                                                                           ccagcccagTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGAAATGGCGAACGCGAAAg                                                      >  3:58859/1‑149 (MQ=255)                                                                                                             ggCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCcaca                                     >  1:185006/1‑148 (MQ=255)                                                                                                              gCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATa                                   <  2:194540/149‑1 (MQ=255)                                                                                                                ccaccaCGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGcc                                                    <  4:138253/130‑1 (MQ=255)                                                                                                                ccaccaCGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGcc                                                    >  3:138253/1‑130 (MQ=255)                                                                                                                ccaccaCGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGc                                 >  6:194250/1‑149 (MQ=255)                                                                                                                ccaccaCGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGc                                 >  5:207154/1‑149 (MQ=255)                                                                                                                   cctcGACCCCAAGGTGATGCCAACACGCTGTAAAGCCCAGGCTACGATGGTCCACGGCCGCGAACAGCGGTCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCAGATAGCCCa                              <  7:219016/146‑1 (MQ=255)                                                                                                                          cccAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTagag                       >  3:45227/1‑149 (MQ=255)                                                                                                                            cAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCa                     >  1:253027/1‑149 (MQ=255)                                                                                                                            cAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCa                     <  1:986/149‑1 (MQ=255)                                                                                                                                   aTGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCAtgggtgg              <  7:162918/149‑1 (MQ=255)                                                                                                                                     gCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATgggtgggt            >  3:79141/1‑149 (MQ=255)                                                                                                                                      ccAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATgggtgggt            <  6:207154/148‑1 (MQ=255)                                                                                                                                       cAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGggtgggtg           >  6:150682/1‑148 (MQ=255)                                                                                                                                        aaCACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGaa         <  6:337110/149‑1 (MQ=255)                                                                                                                                        aaCACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGaa         >  1:321276/1‑149 (MQ=255)                                                                                                                                             ccAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGAt     >  2:149367/1‑148 (MQ=255)                                                                                                                                              cAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGAt     >  6:195424/1‑147 (MQ=255)                                                                                                                                               aGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAg  <  4:45227/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               GGTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAG  >  NC_002947/4913886‑4914176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.