New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5103413 | 46 (0.850) | 3 (0.060) | 3/242 | NT | 6.4% | intergenic (+27/‑362) | PP_5694/yhhS | hypothetical protein/carbohydrate efflux transporter |
? | NC_002947 | = 5103441 | 45 (0.910) | intergenic (+55/‑334) | PP_5694/yhhS | hypothetical protein/carbohydrate efflux transporter |
TCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCG > NC_002947/5103268‑5103561 | tCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCTAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCt > 3:58382/1‑149 (MQ=255) tCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCt < 1:105224/149‑1 (MQ=255) ccGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGa > 8:63450/1‑149 (MQ=255) ttcccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCgg > 2:36968/1‑149 (MQ=255) cccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCTAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGAGCTGCg < 4:58382/146‑1 (MQ=255) cccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGc < 1:237154/145‑1 (MQ=255) cccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCgg < 3:111738/147‑1 (MQ=255) cattcccAAGCCTGAACCCTGAAGATCCATCCTTGACCGTTAACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGATTATCAATCCAGCGCTTACCAGGAATAAGTGCTCATCCCCGACTGTGTGAAAACGGCTGACCTGCTGGc < 4:205375/146‑1 (MQ=255) cccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAccc > 4:239511/1‑149 (MQ=255) cccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAcc < 6:330203/148‑1 (MQ=255) ccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCt > 4:21174/1‑132 (MQ=255) ccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCt < 3:21174/132‑1 (MQ=255) ccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAcccc > 7:163337/1‑149 (MQ=255) ccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAccc < 6:15213/148‑1 (MQ=255) cAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAccccc > 8:145074/1‑149 (MQ=255) gAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGtcatca > 3:295320/1‑149 (MQ=255) cccAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCAcgt < 1:219055‑M2/149‑4 (MQ=255) ccATCCGTGACCGTTCCCGCCGAACCGCCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCCGGTATCACAGCGCATCCCCGACTGTGTGAAAACGtgatgccgggggtagcccgcaggtcagccgttttcacacag < 3:189405‑M1/149‑42 (MQ=255) gTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc < 7:63450/149‑1 (MQ=255) gTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc < 1:36968/149‑1 (MQ=255) gTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc < 8:163337/149‑1 (MQ=255) gCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGtgatgacgggggtagcccgcaggtcagccgttttcacaca < 4:123108‑M1/130‑41 (MQ=255) gCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGtgatgacgggggtagcccgcaggtcagccgttttcacaca > 3:123108‑M1/1‑90 (MQ=255) cGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGc > 8:274372/1‑90 (MQ=255) aaCCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTaacaa > 4:286013/1‑149 (MQ=255) ccGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAAcc < 7:145074/149‑1 (MQ=255) gCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCAc < 4:275219/149‑1 (MQ=255) gCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTac < 4:278848/149‑1 (MQ=255) tGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTacca > 5:3405/1‑149 (MQ=255) gATGGTGACGATCAATACAGCGCTGACCAGGAATAAATGCGCATCCCCGACTGTGTGAAAACGGATGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgccccgccc > 6:193578/1‑148 (MQ=255) tGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTcc > 7:98846/1‑149 (MQ=255) gACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTcc > 4:233607/1‑148 (MQ=255) aCGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCctct < 7:295027/145‑1 (MQ=255) aCGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCctct > 8:295027/1‑145 (MQ=255) gATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcaca < 2:80349/149‑1 (MQ=255) tCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcacaca > 5:167403/1‑149 (MQ=255) aTCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGa > 7:69298/1‑148 (MQ=255) ccAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgccc > 8:255630/1‑127 (MQ=255) ccAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgccc < 7:255630/127‑1 (MQ=255) aGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGt < 3:239511/149‑1 (MQ=255) aCCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgc < 7:89978/116‑1 (MQ=255) aCCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgc > 8:89978/1‑116 (MQ=255) aCCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGcctcc < 3:233607/148‑1 (MQ=255) gAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACg > 2:3249/1‑148 (MQ=255) aTAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCct < 1:148923/118‑1 (MQ=255) aTAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCct > 2:148923/1‑118 (MQ=255) tAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCaaa < 2:219055/149‑1 (MQ=255) aCTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAaga < 3:286013/149‑1 (MQ=255) cTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCGCCCACACAGACGCGTGCCTCCTTACGCAAagag > 5:121537/1‑149 (MQ=255) cgcATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGc < 1:3249/148‑1 (MQ=255) ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACACCCCACTACAACCTGCACCGACACTCTCCCACAACTACTCGTGCCTCCAAACGCAAAGAGGAAGAAATgc > 7:125109/1‑149 (MQ=255) ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCGCCTGCCCCGCCCCGCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATgc > 7:79280/1‑149 (MQ=255) ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATgc > 2:271748/1‑149 (MQ=255) ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATgc < 6:167403/149‑1 (MQ=255) cGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCCCACCGTCTAAAATCAACGTTGTAACACCCCACTCCCACCTGCCCCGCCCCTGTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATgcg > 5:88657/1‑149 (MQ=255) cTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGGCATCAcgttttcacacagtcggggatgcgctgtgataccgggtcagcgctggattgatcgtcaccatcctgctcggcggcagctggcggttcggcgggaacggtcacggatgg < 3:189405‑M2/149‑109 (MQ=255) tgtgtgAAAACGGCTGACCTGCGGGCTACCCCCGTCATCAcgttttcacacagtcggggatgcgcagttattcctggtcagcgctggattgatcgtcaccatcctgctcggcggcagctgccggttcggc > 3:123108‑M2/1‑40 (MQ=255) tgtgtgAAAACGGCTGACCTGCGGGCTACCCCCGTCATCAcgttttcacacagtcggggatgcgcagttattcctggtcagcgctggattgatcgtcaccatcctgctcggcggcagctgccggttcggc < 4:123108‑M2/130‑91 (MQ=255) aaaaCGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACCCGTGCCTCCTAACGCAAAGAGGCAGAAATTCGCCAGCCGCt > 8:309755/1‑148 (MQ=255) aCGtgatgacgggggtagcccgcaggtcagccgttttcacacagtcggggatgcgcagttattcctggtcagcgctggattgatcgtcaccatcctgctcggcggcagctgccggttcggcgtgaacggtcacggatggctcttctggg < 1:219055‑M1/149‑147 (MQ=255) ggCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAgcg > 5:84755/1‑149 (MQ=255) | TCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCG > NC_002947/5103268‑5103561 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |