New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 510341346 (0.850)3 (0.060) 3/242 NT 6.4% intergenic (+27/‑362) PP_5694/yhhS hypothetical protein/carbohydrate efflux transporter
?NC_002947 = 5103441 45 (0.910)intergenic (+55/‑334) PP_5694/yhhS hypothetical protein/carbohydrate efflux transporter

TCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCG  >  NC_002947/5103268‑5103561
                                                                                                                                                 |                                                                                                                                                    
tCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCTAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCt                                                                                                                                                   >  3:58382/1‑149 (MQ=255)
tCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCt                                                                                                                                                   <  1:105224/149‑1 (MQ=255)
  ccGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGa                                                                                                                                                 >  8:63450/1‑149 (MQ=255)
         ttcccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCgg                                                                                                                                          >  2:36968/1‑149 (MQ=255)
           cccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCTAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGAGCTGCg                                                                                                                                           <  4:58382/146‑1 (MQ=255)
           cccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGc                                                                                                                                            <  1:237154/145‑1 (MQ=255)
           cccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCgg                                                                                                                                          <  3:111738/147‑1 (MQ=255)
            cattcccAAGCCTGAACCCTGAAGATCCATCCTTGACCGTTAACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGATTATCAATCCAGCGCTTACCAGGAATAAGTGCTCATCCCCGACTGTGTGAAAACGGCTGACCTGCTGGc                                                                                                                                        <  4:205375/146‑1 (MQ=255)
                cccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAccc                                                                                                                                   >  4:239511/1‑149 (MQ=255)
                cccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAcc                                                                                                                                    <  6:330203/148‑1 (MQ=255)
                 ccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCt                                                                                                                                                   >  4:21174/1‑132 (MQ=255)
                 ccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCt                                                                                                                                                   <  3:21174/132‑1 (MQ=255)
                 ccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAcccc                                                                                                                                  >  7:163337/1‑149 (MQ=255)
                 ccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAccc                                                                                                                                   <  6:15213/148‑1 (MQ=255)
                  cAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAccccc                                                                                                                                 >  8:145074/1‑149 (MQ=255)
                         gAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGtcatca                                                                                                                          >  3:295320/1‑149 (MQ=255)
                            cccAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCAcgt                                                                                                                       <  1:219055‑M2/149‑4 (MQ=255)
                                      ccATCCGTGACCGTTCCCGCCGAACCGCCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCCGGTATCACAGCGCATCCCCGACTGTGTGAAAACGtgatgccgggggtagcccgcaggtcagccgttttcacacag                                                                                                             <  3:189405‑M1/149‑42 (MQ=255)
                                                  gTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc                                                                                                 <  7:63450/149‑1 (MQ=255)
                                                  gTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc                                                                                                 <  1:36968/149‑1 (MQ=255)
                                                  gTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc                                                                                                 <  8:163337/149‑1 (MQ=255)
                                                        gCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGtgatgacgggggtagcccgcaggtcagccgttttcacaca                                                                                                              <  4:123108‑M1/130‑41 (MQ=255)
                                                        gCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGtgatgacgggggtagcccgcaggtcagccgttttcacaca                                                                                                              >  3:123108‑M1/1‑90 (MQ=255)
                                                          cGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGc                                                                                                                                                    >  8:274372/1‑90 (MQ=255)
                                                            aaCCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTaacaa                                                                                       >  4:286013/1‑149 (MQ=255)
                                                              ccGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAAcc                                                                                     <  7:145074/149‑1 (MQ=255)
                                                                 gCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCAc                                                                                  <  4:275219/149‑1 (MQ=255)
                                                                    gCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTac                                                                               <  4:278848/149‑1 (MQ=255)
                                                                      tGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTacca                                                                             >  5:3405/1‑149 (MQ=255)
                                                                                   gATGGTGACGATCAATACAGCGCTGACCAGGAATAAATGCGCATCCCCGACTGTGTGAAAACGGATGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgccccgccc                                                                 >  6:193578/1‑148 (MQ=255)
                                                                                        tGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTcc                                                           >  7:98846/1‑149 (MQ=255)
                                                                                         gACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTcc                                                           >  4:233607/1‑148 (MQ=255)
                                                                                          aCGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCctct                                                             <  7:295027/145‑1 (MQ=255)
                                                                                          aCGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCctct                                                             >  8:295027/1‑145 (MQ=255)
                                                                                            gATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcaca                                                       <  2:80349/149‑1 (MQ=255)
                                                                                              tCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcacaca                                                     >  5:167403/1‑149 (MQ=255)
                                                                                                 aTCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGa                                                   >  7:69298/1‑148 (MQ=255)
                                                                                                   ccAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgccc                                                                      >  8:255630/1‑127 (MQ=255)
                                                                                                   ccAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgccc                                                                      <  7:255630/127‑1 (MQ=255)
                                                                                                     aGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGt                                              <  3:239511/149‑1 (MQ=255)
                                                                                                            aCCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgc                                                                        <  7:89978/116‑1 (MQ=255)
                                                                                                            aCCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgc                                                                        >  8:89978/1‑116 (MQ=255)
                                                                                                            aCCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGcctcc                                        <  3:233607/148‑1 (MQ=255)
                                                                                                                 gAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACg                                   >  2:3249/1‑148 (MQ=255)
                                                                                                                   aTAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCct                                                               <  1:148923/118‑1 (MQ=255)
                                                                                                                   aTAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCct                                                               >  2:148923/1‑118 (MQ=255)
                                                                                                                    tAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCaaa                               <  2:219055/149‑1 (MQ=255)
                                                                                                                      aCTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAaga                             <  3:286013/149‑1 (MQ=255)
                                                                                                                       cTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCGCCCACACAGACGCGTGCCTCCTTACGCAAagag                            >  5:121537/1‑149 (MQ=255)
                                                                                                                          cgcATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGc                          <  1:3249/148‑1 (MQ=255)
                                                                                                                                 ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACACCCCACTACAACCTGCACCGACACTCTCCCACAACTACTCGTGCCTCCAAACGCAAAGAGGAAGAAATgc                  >  7:125109/1‑149 (MQ=255)
                                                                                                                                 ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCGCCTGCCCCGCCCCGCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATgc                  >  7:79280/1‑149 (MQ=255)
                                                                                                                                 ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATgc                  >  2:271748/1‑149 (MQ=255)
                                                                                                                                 ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATgc                  <  6:167403/149‑1 (MQ=255)
                                                                                                                                  cGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCCCACCGTCTAAAATCAACGTTGTAACACCCCACTCCCACCTGCCCCGCCCCTGTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATgcg                 >  5:88657/1‑149 (MQ=255)
                                                                                                                                     cTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGGCATCAcgttttcacacagtcggggatgcgctgtgataccgggtcagcgctggattgatcgtcaccatcctgctcggcggcagctggcggttcggcgggaacggtcacggatgg              <  3:189405‑M2/149‑109 (MQ=255)
                                                                                                                                      tgtgtgAAAACGGCTGACCTGCGGGCTACCCCCGTCATCAcgttttcacacagtcggggatgcgcagttattcctggtcagcgctggattgatcgtcaccatcctgctcggcggcagctgccggttcggc                                >  3:123108‑M2/1‑40 (MQ=255)
                                                                                                                                      tgtgtgAAAACGGCTGACCTGCGGGCTACCCCCGTCATCAcgttttcacacagtcggggatgcgcagttattcctggtcagcgctggattgatcgtcaccatcctgctcggcggcagctgccggttcggc                                <  4:123108‑M2/130‑91 (MQ=255)
                                                                                                                                            aaaaCGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACCCGTGCCTCCTAACGCAAAGAGGCAGAAATTCGCCAGCCGCt        >  8:309755/1‑148 (MQ=255)
                                                                                                                                               aCGtgatgacgggggtagcccgcaggtcagccgttttcacacagtcggggatgcgcagttattcctggtcagcgctggattgatcgtcaccatcctgctcggcggcagctgccggttcggcgtgaacggtcacggatggctcttctggg    <  1:219055‑M1/149‑147 (MQ=255)
                                                                                                                                                 ggCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAgcg  >  5:84755/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
TCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCG  >  NC_002947/5103268‑5103561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.