| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1487006 = | 17 (0.320) | 3 (0.070) | 3/204 | NT | 29.8% | intergenic (+22/+108) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | 1487096 = | 1 (0.020) | intergenic (+112/+18) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
CCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGC > NC_002947/1487023‑1487239 | CCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGc < 6:10178‑M1/148‑1 (MQ=255)CCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGc < 2:133070‑M1/148‑1 (MQ=255)CCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGc < 3:188988‑M1/148‑1 (MQ=255) ccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCg < 4:57026‑M2/73‑1 (MQ=255) ccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCg > 3:57026‑M2/68‑140 (MQ=255) CACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCGGCGAAGGGCCGCAACGCGTCCATGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCt < 8:307842‑M1/149‑1 (MQ=255) CACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCt < 1:340895‑M1/149‑1 (MQ=255) acaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCtt > 7:309830‑M2/66‑149 (MQ=255) tGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAg < 6:208432/115‑1 (MQ=255) aaTTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAAc < 4:236625/122‑1 (MQ=255) aaTTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAAc > 3:236625/1‑122 (MQ=255) aaTTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGAt > 1:142476/1‑148 (MQ=255) aaTTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGAt < 2:142476/148‑1 (MQ=255) aTTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATg < 4:188988/148‑1 (MQ=255) ggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATg < 2:66520‑M2/115‑1 (MQ=255) ggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATg > 1:66520‑M2/25‑139 (MQ=255) gagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTtctc < 1:133070‑M2/126‑1 (MQ=255) ggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTtctc < 7:34607‑M2/126‑1 (MQ=255) ggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTtctc > 8:34607‑M2/19‑144 (MQ=255) gcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTggg > 6:204344‑M2/18‑149 (MQ=255) ttcccgcgaagggcCGCAACGCGGCACTGGGTTTATTTCTCTTCATGGCGGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAg > 1:251255‑M2/15‑95 (MQ=255) tgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAg < 2:251255‑M2/81‑1 (MQ=255) ccgcgaagggcTGCCGCGCAGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTCGAt > 7:192116‑M2/12‑149 (MQ=255) ccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGGAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGAt > 1:276850‑M2/12‑149 (MQ=255) ccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCCGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCACCTTCAACTGCTGCCCGATGCGCAACACCGCCATGGGAATCTACACCTTGCGCTTCAt > 5:266567‑M2/12‑149 (MQ=255) atggCCGGAAAGGGGGCCTTGGTTTTTTTCTTTTTCTTGGTGGCATGCGGGGGCGGGTGG‑GGGCGCATGCCCAACTCGGGGATCAGGTTAAACTTCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCgcgc < 2:117544/147‑1 (MQ=255) | CCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCA‑GCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGC > NC_002947/1487023‑1487239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |