New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1811373	45 (0.840)	4 (0.080)	4/252	NT	8.6%	coding (688/708 nt)	ispD	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase
	?	NC_002947	= 1811405	42 (0.820)					intergenic (+12/+116)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator

GACCGACGAAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAA  >  NC_002947/1811261‑1811553                                                                                                                                                 |                                                                                                                                                     gACCGACGAAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGgctg                                                                                                                                                  <  3:73351‑M2/149‑5 (MQ=255)    cgacgaAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGcc                                                                                                                                               >  1:62031/1‑149 (MQ=255)      acgaAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCtt                                                                                                                                             >  7:277958/1‑149 (MQ=255)      acgaAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCtt                                                                                                                                             >  7:13454/1‑149 (MQ=255)            ccTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTcgcg                                                                                                                                       >  7:221761/1‑149 (MQ=255)             cTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCgg                                                                                                                                      <  4:73351/149‑1 (MQ=255)                     tCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAAccc                                                                                                                              >  8:187060/1‑149 (MQ=255)                      cGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCg                                                                                                                             >  5:102537/1‑149 (MQ=255)                           ggTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTcc                                                                                                                         >  7:44369/1‑148 (MQ=255)                            gTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAAcc                                                                                                                               >  8:120306/1‑141 (MQ=255)                            gTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAAcc                                                                                                                               <  7:120306/141‑1 (MQ=255)                                 gTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATg                                                                                                                  >  6:37221/1‑149 (MQ=255)                                   cAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGa                                                                                                                <  2:46601/149‑1 (MQ=255)                                     ggCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGAtt                                                                                                              >  2:251124/1‑149 (MQ=255)                                                tggtggAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCggtggt                                                                                                   >  8:274964/1‑149 (MQ=255)                                                  gtggAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGtt                                                                                                  <  2:62031/148‑1 (MQ=255)                                                   tggAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTTAAACCCCTGCGACAATGGATTTGATAGGTGGTTgg                                                                                                >  3:12261/1‑149 (MQ=255)                                                     gAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGa                                                                                               <  4:40387/148‑1 (MQ=255)                                                     gAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAAACCGCTCCTACAAAGGATTGCATCGGTGGTTGGa                                                                                               >  6:21860/1‑148 (MQ=255)                                                       aGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCgg                                                                                                                                      >  4:64900/1‑107 (MQ=255)                                                       aGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGacac                                                                                            <  1:235375/149‑1 (MQ=255)                                                                  acaacaTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTTAACCCGCGCCTACAAAGGATTGCATCGGTGGTTGGGCACAGACcgtcg                                                                                   >  8:190096/1‑147 (MQ=255)                                                                  acaacaTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACcgtcgt                                                                                  <  5:89152/148‑1 (MQ=255)                                                                  acaacaTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACcgtcg                                                                                   >  2:131328/1‑147 (MQ=255)                                                                  acaacaTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTa                                                                                 <  1:251124/149‑1 (MQ=255)                                                                   caacaTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAg                                                                                <  8:277958/149‑1 (MQ=255)                                                                       aTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACcgtcgt                                                                                  <  8:296469/143‑1 (MQ=255)                                                                       aTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACcgtcgt                                                                                  >  7:296469/1‑143 (MQ=255)                                                                       aTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGc                                                                            <  6:154621/149‑1 (MQ=255)                                                                       aTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGc                                                                            <  6:102537/149‑1 (MQ=255)                                                                       aTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGc                                                                            <  5:37221/149‑1 (MQ=255)                                                                        tAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCg                                                                           <  6:29022/149‑1 (MQ=255)                                                                          aaGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCgg                                                                          <  7:274964/148‑1 (MQ=255)                                                                          aaGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCgg                                                                          <  8:13454/148‑1 (MQ=255)                                                                             gTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGttt                                                                      <  3:198374/149‑1 (MQ=255)                                                                                aCCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTAc                                                                    <  2:91862/148‑1 (MQ=255)                                                                                  ccGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCcg                                                                 >  8:97828/1‑149 (MQ=255)                                                                                              tctgGAATGGTGGCGCCAGCGGTGGGGGGTTAAACGCTGAGCGTTCTCCTGGGCGGGCCTTTTCGGGGTTAAACCCGCTCCTACAATGGATTGCATGGGTGGTTGGACACAGACCGTCGTCGGCGCGGGTTTACCCGCGAAGAGGCCa                                                      <  8:44369/148‑1 (MQ=37)                                                                                                tcGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCGCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGt                                                    >  2:293797/1‑148 (MQ=255)                                                                                                         tGCGCCAGCGCTGGGCTGGTAAACGCTGAGCGTTCTCCTGGgctggcgcaaccattcgagatcttcgggccgggtcacctttatgttgtcactgcgcccttccaccagccgcggcgcctgaccggaccattcgatggc                                                     >  5:226886‑M2/1‑41 (MQ=255)                                                                                                         tGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGgctggcgcaaccattcgagatcttcgggccgggtcacctttatgttgtcactgcgcccttccaccagccgcggcgcctgaccggaccattcgatggc                                                     <  6:226886‑M2/138‑98 (MQ=255)                                                                                                         tGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAgcagca                                          >  7:81769/1‑149 (MQ=255)                                                                                                            gcCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGgctggcgcaaccattcgagatcttcgggccgggtcacctttatgttgtcactgcgcccttccaccagccgcggcgcctgaccggaccattcgatggccgaggcttc                                            >  5:12985‑M2/1‑38 (MQ=255)                                                                                                            gcCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGgctggcgcaaccattcgagatcttcgggccgggtcacctttatgttgtcactgcgcccttccaccagccgcggcgcctgaccggaccattcgatggccgaggcttc                                            <  6:12985‑M2/144‑107 (MQ=255)                                                                                                                    tGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGaca                                                                                             <  5:308579/87‑1 (MQ=255)                                                                                                                    tGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGaca                                                                                             >  6:308579/1‑87 (MQ=255)                                                                                                                          ggTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACCCAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGaaa                         <  8:221761/149‑1 (MQ=255)                                                                                                                           gTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAAc                        >  1:64165/1‑149 (MQ=255)                                                                                                                                       cGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTGCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTGGTAGGAGCGGGTTTAGCCGCGAAGAGGCCAGTACCAGCCGCACATACCCTCAGCCGCAACGAAACTCCGGc             >  8:124331/1‑148 (MQ=38)                                                                                                                                       cGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGGAGGAGCGGGTTTACGCGCGAAGAGGCCAGTACCAGCAGCACCTCCCGGGAGGCGGAACGATTCTCCGGc             >  7:213449/1‑148 (MQ=37)                                                                                                                                                 ggCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCaa  <  7:124331/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GACCGACGAAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAA  >  NC_002947/1811261‑1811553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.