New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2472140	12 (0.220)	7 (0.180)	6/186	NT	38.4%	intergenic (+44/+105)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	= 2472186	14 (0.370)					intergenic (+90/+59)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase

CAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAAC  >  NC_002947/2472048‑2472332                                                                                                                                           |                                                                                                                                                   cAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgg                                                                                                                                          >  5:247522‑M2/1‑139 (MQ=255)  aaCCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcggg                                                                                                                                         <  8:96336‑M2/149‑12 (MQ=255)                ccATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaa                                                                                                                             >  7:96336‑M2/1‑124 (MQ=255)                 cATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtt                                                                                                                                       <  5:149157‑M2/136‑14 (MQ=255)                 cATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtt                                                                                                                                       >  6:149157‑M2/1‑123 (MQ=255)                                                                   ccTCTTCGCGGGTAAAACCGCGCCGACGACGGCCGGCGCCCAAACACCAATGTGTGTCCACCCCCAAAAAGGGGTAGGAGCGGGTTTTCCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTAACTACGCCCGGgttttta                                                                         >  4:97686/1‑146 (MQ=38)                                                                             ggTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttc                                                              <  3:272075‑M2/149‑87 (MQ=255)                                                                                   cccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtagtagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggtt                                                        <  5:303339‑M2/149‑93 (MQ=255)                                                                                   cccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggtt                                                        <  2:49445‑M2/149‑93 (MQ=255)                                                                                    ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttg                                                       <  3:106244‑M2/149‑94 (MQ=255)                                                                                    ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTc                                                            >  3:248651/1‑144 (MQ=255)                                                                                    ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTc                                                            <  4:248651/144‑1 (MQ=255)                                                                                      gCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCg                                                     >  6:130420/1‑149 (MQ=255)                                                                                       ccccTACGACGCCCTGCCCCCAAACCCCAATGTGTGCCCACCCCCAATCAGGTGAAGCAGCGGTTTAACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGc                                                    <  3:97686/147‑1 (MQ=255)                                                                                            acgacgGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGc                                                    >  1:173059/1‑144 (MQ=255)                                                                                            acgacgGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGc                                                    <  2:173059/144‑1 (MQ=255)                                                                                             cgacgGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatc                                                                          >  8:134611‑M2/1‑47 (MQ=255)                                                                                             cgacgGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatc                                                                          <  7:134611‑M2/121‑75 (MQ=255)                                                                                             cgacgGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCAt                                              >  7:171084/1‑149 (MQ=255)                                                                                                  gCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcga                                                                                                                              <  5:220711‑M2/64‑23 (MQ=255)                                                                                                  gCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcga                                                                                                                              >  6:220711‑M2/1‑42 (MQ=255)                                                                                                     tGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCt                                                             >  5:188283/1‑126 (MQ=255)                                                                                                     tGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCt                                                             <  6:188283/126‑1 (MQ=255)                                                                                                       cgcCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGt                                     <  5:130420/148‑1 (MQ=255)                                                                                                            aaaCACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACAccc                               >  7:127569/1‑149 (MQ=255)                                                                                                                         tgtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGccc                  >  2:119703/1‑149 (MQ=255)                                                                                                                               cccccAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttggagtcattcaggcccatgaggatcttgtgcgcctccagcacct            >  4:106244‑M2/1‑13 (MQ=255)                                                                                                                                  ccAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTtcat          >  3:227480/1‑148 (MQ=255)                                                                                                                                        aGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttggagtcattcaggcccatgaggatcttgtgcgcctccagcaccttggagcgc    >  1:49445‑M2/1‑4 (MQ=255)                                                                                                                                         ggTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAg                                                                <  4:261062/87‑1 (MQ=255)                                                                                                                                         ggTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAg                                                                >  3:261062/1‑87 (MQ=255)                                                                                                                                         ggTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAac  >  7:162525/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                   CAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAAC  >  NC_002947/2472048‑2472332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.