New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4015419	57 (1.060)	4 (0.080)	4/256	NT	6.9%	coding (775/1404 nt)	PP_3543	iron‑sulfur cluster‑binding protein
	?	NC_002947	= 4015483	53 (1.020)					coding (839/1404 nt)	PP_3543	iron‑sulfur cluster‑binding protein

ATGTTCGACAAGGACACCCTGGCGGTCGCTTACGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCGAGCACAGCCTGCAAGGCGGTACC  >  NC_002947/4015335‑4015622                                                                                                                                                     |                                                                                                                                            aTGTTCGACAAGGACACCCTGGCGGTCGCTTACGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGGGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCAt                                                                                                                                             <  1:247007/149‑1 (MQ=255)        aCAAGGACACCCTGGCGGTCGCTTACGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATc                                                                                                                                      >  4:180419/1‑149 (MQ=255)                acCCTGGCGGTCGCTTACGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTgatgg                                                                                                                              >  2:232623/1‑149 (MQ=255)                  ccTGGCGGTCGCTTACGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTgatggct                                                                                                                            >  3:147781/1‑149 (MQ=255)                    tGGCGGTCGCTTACGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTgatggcttg                                                                                                                          <  4:52558/149‑1 (MQ=255)                      gCGGTCGCTTACGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTgatggcttgca                                                                                                                        <  8:203995/149‑1 (MQ=255)                      gCGGTCGCTTACGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTgatggcttg                                                                                                                          <  3:180419/147‑1 (MQ=255)                            gCTTACGACCCGCGTCGGGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTgatggcttgcagatgg                                                                                                                   <  1:144645/148‑1 (MQ=255)                              ttACGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTgatggcttgcagatggctt                                                                                                                >  3:174642/1‑149 (MQ=255)                                aCGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTgatggcttgcagatggctt                                                                                                                <  5:317619/147‑1 (MQ=255)                                 cGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTgatggcttgcagatggcttgca                                                                                                             >  6:272740/1‑149 (MQ=255)                                     ccGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCgg                                                                                                         >  4:64409/1‑149 (MQ=255)                                          tcgtGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGTtgtg                                                                                                    >  7:70146/1‑149 (MQ=255)                                                    gCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCAt                                                                                          >  7:22610/1‑149 (MQ=255)                                                      ccGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATc                                                                                         >  4:1352/1‑148 (MQ=255)                                                       cGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCTGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGa                                                                                       <  8:312998/149‑1 (MQ=255)                                                       cGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGa                                                                                       >  7:312998/1‑149 (MQ=255)                                                            tCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCt                                                                                  <  5:272740/149‑1 (MQ=255)                                                             ccGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCtg                                                                                 >  6:32195/1‑149 (MQ=255)                                                                cgcAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACAGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGa                                                                              >  7:219017/1‑149 (MQ=255)                                                                 gcAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGa                                                                              <  5:3048/148‑1 (MQ=255)                                                                    aGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACggg                                                                          <  3:293982/149‑1 (MQ=255)                                                                      aaaGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACgggg                                                                         >  7:243095/1‑148 (MQ=255)                                                                      aaaGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACgggg                                                                         <  8:243095/148‑1 (MQ=255)                                                                          gaaGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATg                                                                    >  5:161188/3‑149 (MQ=255)                                                                          gCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGTTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATg                                                                    <  8:70146/149‑1 (MQ=255)                                                                          gCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATg                                                                    <  7:8483/149‑1 (MQ=255)                                                                          gCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATg                                                                    <  3:1352/149‑1 (MQ=255)                                                                             gTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGAc                                                                 <  8:219017/149‑1 (MQ=255)                                                                             gTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGAACCCTGTGCGTGCAGGTGTGCCCCACCGGCATcgacgtcactgcctttcttgcgcggaccacgggcctcgccacgacgcgggtcgtaagcgaccgccagggtgtcctt                                                                 <  5:22871‑M2/149‑77 (MQ=255)                                                                              tGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGAc                                                                 >  7:60549/1‑148 (MQ=255)                                                                                aCGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACTGGGTAATGGACaa                                                               <  1:179357/148‑1 (MQ=255)                                                                                aCGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACaa                                                               <  4:147781/148‑1 (MQ=255)                                                                                 cGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCcgc                                                                                                <  8:303080/114‑1 (MQ=255)                                                                                  gTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATcgacgtcactgcctttcttgcgcggaccacgggcctcgccacgacgcgggtcgtaagcgaccgccagggtgtccttgtcg                                                             <  3:321278‑M2/148‑81 (MQ=255)                                                                                               gACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCcgc                                               <  3:64409/149‑1 (MQ=255)                                                                                                    ggCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGcc                                           <  6:161188/148‑1 (MQ=255)                                                                                                       gACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATcgacgtcactgcctttcttgcgcggaccacgggcctcgccacgacgcgggtcgtaagcgaccgccagggtgtccttgtcgaacatcacgctctggaagcgcg                                       >  4:321278‑M2/1‑47 (MQ=255)                                                                                                        aCTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATcgacgtcactgcctttcttgcgcggaccacgggcctcgccacgacgcgggtcgtaagcgaccgccagggtgtccttgtcgaacatcacgctctggaagcgcgc                                      >  6:22871‑M2/1‑46 (MQ=255)                                                                                                          tGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGACCGCGGCCTGATTgg                                    >  4:281318/1‑149 (MQ=255)                                                                                                           gCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGc                                   >  6:11705/1‑149 (MQ=255)                                                                                                            cATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGc                                   >  6:190369/1‑148 (MQ=255)                                                                                                            cATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCAACGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTgg                                    <  1:259616/147‑1 (MQ=255)                                                                                                             aTCGATTGAAACCTTTTCGTTAAGGTGTTCACCACAGGCATCGAAATCCGAGATGGATTGCAGATGGCTTGCATCGGATGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGTACAAGATGGTTTACGACCGAGGCCTGATTggat                                  >  6:141832/1‑146 (MQ=255)                                                                                                              tCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTa                                 >  1:337610/1‑148 (MQ=255)                                                                                                              tCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTa                                 >  8:194020/1‑148 (MQ=255)                                                                                                                gATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACaa                              <  5:190369/149‑1 (MQ=255)                                                                                                                     cACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCg                         <  8:22610/149‑1 (MQ=255)                                                                                                                      aCCCTGTGCGTGCAGGTGTGCCCCAGCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATTGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCGa                        <  5:340280/149‑1 (MQ=255)                                                                                                                      aCCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGTCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCGa                        <  1:232623/149‑1 (MQ=255)                                                                                                                       cccTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGCCGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACCAGTCCGAg                       >  3:266784/1‑149 (MQ=255)                                                                                                                        ccTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCGAg                       >  4:268984/1‑148 (MQ=255)                                                                                                                              cgtgcAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCGAGCACAGcc                >  8:108529/1‑149 (MQ=255)                                                                                                                                   agctcccccccACCTCCATCGACCTCCGGGATCGCTTCCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCGAGCACAGCCTGCaa           <  4:266784/142‑1 (MQ=255)                                                                                                                                     gtgtGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATgg                                                          <  8:165492/100‑1 (MQ=255)                                                                                                                                     gtgtGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATgg                                                          >  7:165492/1‑100 (MQ=255)                                                                                                                                        tgCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCGAGCACAGCCTGCAAGGCg       <  5:32195/148‑1 (MQ=255)                                                                                                                                          ccccACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCGAGCACAGCCTGCAAGGCGGTa    <  5:11705/149‑1 (MQ=255)                                                                                                                                            ccACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCGAGCACAGCCTGCAAGGCGGTacc  >  3:11617/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                            ATGTTCGACAAGGACACCCTGGCGGTCGCTTACGACCCGCGTCGTGGCGAGGCCCGTGGTCCGCGCAAGAAAGGCAGTGACGTCGGTGCCCAGGGACTGGGCGACTGCATCGATTGCACCCTGTGCGTGCAGGTGTGCCCCACCGGCATCGACATCCGTGATGGCTTGCAGATGGCTTGCATCGGCTGTGCCGCGTGCATCGACGCCTGTGACGGGGTAATGGACAAGATGGGTTACGCCCGCGGCCTGATTGGCTACAAGTCCGAGCACAGCCTGCAAGGCGGTACC  >  NC_002947/4015335‑4015622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.