New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4537518 =	NA (NA)	5 (0.100)	5/254	NT	100%	coding (853/1533 nt)	PP_4025	transposase
	?	NC_002947	4537544 =	0 (0.000)					coding (879/1533 nt)	PP_4025	transposase

ATGAAACTCGCGTGCAGGTGCTCAAAGAGCCGGATCGTGATCCGACCAGTCAATCCTGGATGTGGGTGCAGGCCAGTGGCCCGCCTGATCGACAAGTCGTGCTGTTCGATTACACCACCAGCCGCGCGCAGGAGGTGCCGCTGCGCCTGC‑‑‑TGGAGGGCTATCGCGGTTACGTGATGACCGATGATTACGCCGGTTACAACGCGTTGGCGCTACAGCCGGGCGTTGAACGACTGGCGTGCATGGCGCATGTCCGGCGTAAATTCGTCGAAGCGCAGAAGGTGCAGCCTAAG  >  NC_002947/4537396‑4537685                                                                                                                                                     |                                                                                                                                                 cttcgacgaatttacgccggacatgcgccatgcacgccagtcgttcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgg                                                                                                                                                  <  5:230411‑M2/1‑1 (MQ=255) cttcgacgaatttacgccggacatgcgccatgcacgccagtcgttcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgg                                                                                                                                                  <  6:13963‑M2/1‑1 (MQ=255)  ttcgacgaatttacgccggacatgcgccatgcacgccagtcgttcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgGc                                                                                                                                                 >  7:157168‑M2/148‑149 (MQ=255)  ttcgacgaatttacgccggacatgcgccatgcacgccagtcgctcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgGc                                                                                                                                                 >  4:94782‑M2/148‑149 (MQ=255)  aatctcgaatttacgccggacatgcgccatgcacgccagtcgttcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgGc                                                                                                                                                 <  7:294833‑M2/2‑1 (MQ=255)     gaggaatttacgcagtacatgctccatgcacgccagtcgttgaacgaccggctgtagcgcctagtcgttgtaaccgtcgtaatcatcggtcatctcgtaagcgcgttagccgtccagcaggcgcagcggcacctcctgcgcgcgGC‑‑‑Tgg                                                                                                                                           <  6:280532‑M2/5‑1 (MQ=255)     gacgaatttacgccggacatgcgccatgcacgccagtcgttcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgGC‑‑‑Tgg                                                                                                                                           >  7:206584‑M2/145‑149 (MQ=255)     gacgaatttacgccggacatgcgccatgcacgccagtcgttcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgGC‑‑‑Tgg                                                                                                                                           >  7:188329‑M2/145‑149 (MQ=255)     gacgaatttacgccggacatgcgccatgcacgccagtcgttcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgGC‑‑‑Tgg                                                                                                                                           >  5:91767‑M2/145‑149 (MQ=255)     gacgaatttacgccggacatgcgccatgcacgccagtcgttcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgGC‑‑‑Tg                                                                                                                                            <  2:20645‑M2/4‑1 (MQ=255)     gacgaatttacgccggacatgcgccatgcacgccagtcgttcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgGC‑‑‑Tg                                                                                                                                            <  3:312571‑M2/4‑1 (MQ=255)        gaatttacgccggacatgcgccatgcacgccagtcgttcaacgcccggctgtagcgccaacgcgttgtaaccggcgtaatcatcggtcatcacgtaaccgcgatagccctccagcaggcgcagcggcacctcctgcgcgcgGc                                                                                                                                                 >  8:294833‑M2/142‑143 (MQ=255)                                                                                                                    ctccagcaggcgcagcggcacctcctgcgcgcgGC‑‑‑TGGAGGGCTATCGCGGTTACGTGATGACCGATGATTACGCCGGTTACAACGCGTTGGCGCTACAGCCGGGCGTTGAACGACTGGCGTGCATGGCGCATGTCCGGCGTAAATtcg                            >  8:18782‑M2/34‑149 (MQ=255)                                                                                                                       cagcaggcgcagcggcacctcctgcgcgcgGCTGGTGGAGGGCTATCGCGGTTACGTGATGACCGATGATTACGCCGGTTACAACGCGTTGGCGCTACAGCCGGGCGTTGAACGACTGGCGTGCATGgcg                                               <  4:91446‑M2/100‑1 (MQ=255)                                                                                                                       cagcaggcgcagcggcacctcctgcgcgcgGCTGGTGGAGGGCTATCGCGGTTACGTGATGACCGATGATTACGCCGGTTACAACGCGTTGGCGCTACAGCCGGGCGTTGAACGACTGGCGTGCATGgcg                                               >  3:91446‑M2/31‑130 (MQ=255)                                                                                                                            ggcgcagcggcacctcctgcgcgcgGC‑‑‑TGGAGGGCTATCGCGGTTACGTGATGACCGATGATTACGCCGGTTACAACGCGTTGGCGCTACAGCCGGGCGTTGAACGACTGGCGTGCAt                                                   <  2:324433‑M2/93‑1 (MQ=255)                                                                                                                            ggcgcagcggcacctcctgcgcgcgGC‑‑‑TGGAGGGCTATCGCGGTTACGTGATGACCGATGATTACGCCGGTTACAACGCGTTGGCGCTACAGCCGGGCGTTGAACGACTGGCGTGCAt                                                   >  1:324433‑M2/26‑118 (MQ=255)                                                                                                                                              tgggcCTGC‑‑‑TGGAGGGCTATCGCGGTTACGTGATGACCGATGATTACGCCGGTTACAACGCGTTGGCGCTACAGCCGGGCGTTGAACGACTGGCGTCCATGGCGCATGTCCGGCGTAAATTCGTCGAAGCGCAGAAGGTGCAGCCTAAg  <  1:89375/146‑1 (MQ=1)                                                                                                                                                     |                                                                                                                                                 ATGAAACTCGCGTGCAGGTGCTCAAAGAGCCGGATCGTGATCCGACCAGTCAATCCTGGATGTGGGTGCAGGCCAGTGGCCCGCCTGATCGACAAGTCGTGCTGTTCGATTACACCACCAGCCGCGCGCAGGAGGTGCCGCTGCGCCTGC‑‑‑TGGAGGGCTATCGCGGTTACGTGATGACCGATGATTACGCCGGTTACAACGCGTTGGCGCTACAGCCGGGCGTTGAACGACTGGCGTGCATGGCGCATGTCCGGCGTAAATTCGTCGAAGCGCAGAAGGTGCAGCCTAAG  >  NC_002947/4537396‑4537685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.