New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5658270	51 (0.950)	3 (0.060)	3/250	NT	6.2%	coding (325/993 nt)	sahR	methionine metabolism transcriptional regulator
	?	NC_002947	= 5658305	42 (0.820)					coding (360/993 nt)	sahR	methionine metabolism transcriptional regulator

CCGCGAAGGCAACGCCATCTTCTACCGCCGTGCCCTGCCCGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTCGACCCGGCCGCCAGCGCG  >  NC_002947/5658158‑5658449                                                                                                                                                    |                                                                                                                                                     ccGCGAAGGCAACGCCATCTTCTACCGCCGTGCCCTGCCCGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGAc                                                                                                                                                     <  6:21272‑M2/149‑2 (MQ=255)        ggCAACGCCATCTTCTACCGCCGTGCCCTGCCCGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGggcggc                                                                                                                                              <  6:77063/149‑1 (MQ=255)                    ttctACCGCCGTGCCCTGCCCGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGa                                                                                                                                  >  5:116294/1‑149 (MQ=255)                      ctACCGCCGTGCCCTGCCCGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGa                                                                                                                                  <  2:105134/147‑1 (MQ=255)                       tACCGCCGTGCCCTGCCCGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGActt                                                                                                                               >  7:43745/1‑149 (MQ=255)                           gccgTGCCCTGCCCGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACttcttc                                                                                                                           <  7:241011/149‑1 (MQ=255)                                    tgcccGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGAc                                                                                                                                                     >  8:36903‑M2/1‑113 (MQ=255)                                       ccGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGaa                                                                                                               <  6:116294/149‑1 (MQ=255)                                        cGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCAccagccag                                                                                                                                    >  8:189952/1‑127 (MQ=255)                                         gATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAaga                                                                                                             <  3:59360/149‑1 (MQ=255)                                               cTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCGAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGtt                                                                                                       <  8:283953/149‑1 (MQ=255)                                               cTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGtt                                                                                                       >  8:127209/1‑149 (MQ=255)                                                  cgcCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTgcgc                                                                                                                     <  6:316707/132‑1 (MQ=255)                                                  cgcCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTgcgc                                                                                                                     >  5:316707/1‑132 (MQ=255)                                                   gcCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑t                                                                                               <  5:21272/149‑1 (MQ=255)                                                      tGGGTGGCCGGCTGCACGCGGAGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTACAGCAGCGACCGGCGGCCACCAGCCAGGACTTCTTCCTCCACGTGGAAGAGAAGTTCC‑‑‑G‑TGc                                                                                             >  7:133544/1‑148 (MQ=255)                                                        ggTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCca                                                                                          >  4:51567/1‑149 (MQ=255)                                                          tGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCcag                                                                                         >  8:46782/1‑148 (MQ=255)                                                                    cACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGAt                                                                              <  8:208271/149‑1 (MQ=255)                                                                    cACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGAt                                                                              >  6:346865/1‑149 (MQ=255)                                                                     aCGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACttcttc                                                                                                                           <  4:267429/107‑1 (MQ=255)                                                                     aCGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACttcttc                                                                                                                           >  3:267429/1‑107 (MQ=255)                                                                         ggcgCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCg                                                                         <  3:51567/149‑1 (MQ=255)                                                                           cgcTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGc                                                                       <  1:96549/149‑1 (MQ=255)                                                                            gctgctCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTgg                                                                                                                 <  4:225068/110‑1 (MQ=255)                                                                            gctgctCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTgg                                                                                                                 >  3:225068/1‑110 (MQ=255)                                                                                 tCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCg                                                                 >  6:137437/1‑149 (MQ=255)                                                                                 tCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCg                                                                 >  6:277939/1‑149 (MQ=255)                                                                                         gTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGa                                                                               >  3:118595/1‑127 (MQ=255)                                                                                         gTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGa                                                                               <  4:118595/127‑1 (MQ=255)                                                                                              cgacCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACa                                                    <  5:277939/149‑1 (MQ=255)                                                                                                acCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGc                                                  <  4:117613/149‑1 (MQ=255)                                                                                                  cTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCCTGGGAAGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGa                                                      >  1:114170/1‑147 (MQ=255)                                                                                                  cTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCct                                                >  1:185878/1‑149 (MQ=255)                                                                                                      cccTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCctgctg                                            <  5:346865/149‑1 (MQ=255)                                                                                                        cTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGgc                                          >  2:233027/1‑149 (MQ=255)                                                                                                            cGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGAcgggcggtagggccaggtcgtcgacttcttcgagcagcgccgcgtgcagccggccacccaggcgcaggccatcgggcagggcacggcggtagaagatggcgttgcctt                                          <  8:155892‑M2/149‑109 (MQ=255)                                                                                                             gCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGAcgggcggtagggccaggtcgtcgacttcttcgagcagcgccgcgtgcagccggccacccaggcgcaggccatcgggcagggcacggcggtagaagatggcgttgccttc                                         <  5:101665‑M2/149‑110 (MQ=255)                                                                                                             gCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCgctgc                                     >  8:45396/1‑149 (MQ=255)                                                                                                                  aTGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGAc                                <  8:43745/149‑1 (MQ=255)                                                                                                                     tgCAGGCGCGCATAGCCCATGTCCAGCAGCGAcgggcggtagggccaggtcgtcgacttcttcgagcagcgccgcgtgcagccggccacccaggcgcaggccatcgggcagggcacggcggtagaagatggcgttgccttcgcggcgg                                  >  7:155892‑M2/1‑32 (MQ=255)                                                                                                                              gcATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTc                    >  5:238508/1‑149 (MQ=255)                                                                                                                                   gCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTCGAccc               <  7:127209/149‑1 (MQ=255)                                                                                                                                    cccATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTCGACCCg              >  2:291941/1‑149 (MQ=255)                                                                                                                                         gTCCAGCAGCGACTGCCGGCCCCCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTCGACCCGgcc           <  8:251463/147‑1 (MQ=255)                                                                                                                                         gTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGCTCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTCGACCCGgcc           >  7:251463/1‑147 (MQ=255)                                                                                                                                          tCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTCGACCCGgccgcc        <  7:45396/149‑1 (MQ=255)                                                                                                                                            cagcagCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTCGACCCGGCCGCCAg      >  5:198127/1‑149 (MQ=255)                                                                                                                                                agcGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTCGACCCGGCCGCCAgcgcg  >  7:249907/1‑149 (MQ=255)                                                                                                                                                agcGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTCGACCCGGCCGCCAgcgcg  >  3:190787/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CCGCGAAGGCAACGCCATCTTCTACCGCCGTGCCCTGCCCGATGGCCTGCGCCTGGGTGGCCGGCTGCACGCGGCGCTGCTCGAAGAAGTCGACGACCTGGCCCTACCGCCCGATGTGCAGGCGCGCATAGCCCATGTCCAGCAGCGACGGGCGGCCACCAGCCAGGACTTCTTCCTGCGCGTGGAAGAGAAGTTCC‑‑‑G‑TGCCCAGCAGGACCTGATCGCCGGCCTTCCGCAGTACCGCGACAGCCTGCTGGCGCTGCTCGACAAACTGCATTTCGACCCGGCCGCCAGCGCG  >  NC_002947/5658158‑5658449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.