New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5746405 =	51 (0.950)	3 (0.060)	3/258	NT	5.6%	coding (375/423 nt)	PP_5042	hypothetical protein
	?	NC_002947	5746469 =	52 (0.990)					intergenic (+16/+83)	PP_5042/PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein

CATGTACCTGGATCGTAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTC  >  NC_002947/5746324‑5746615                                                                                                                                                  |                                                                                                                                                     cATGTACCTGGATCGTAAAAGCCGGCTGTGCACCATTTATGACAAGCTCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCAt                                                                                                                                                     <  3:214831/147‑1 (MQ=255)   ggagcggtgggttcagtgcttcatgcccagctcggcatcgccacagaatcgagcgccgcccgcgcggcgctcgatttatGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATaaa                                                                                                                                                  >  2:296823‑M1/80‑148 (MQ=255)      gcggtgggttcagtgcttcatgcccagctcggcatcgccacagaatcgagcgccgcccgcgcggcgctcgatttatGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGa                                                                                                                                              >  2:224674‑M1/77‑149 (MQ=255)       ccTGGATCGTAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAg                                                                                                                                             <  8:189334/149‑1 (MQ=255)                tAAAAGCCGGCTGTACAACATTTATGAAAATCTACCGGATACCTGCCGCAACCACACAAAGGTCGGGCCACGGCCGGGGTATTGCGCATACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCcgcgcg                                                                                                                                   >  6:109394/1‑149 (MQ=255)                 aaaaGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCgcgg                                                                                                                                  >  7:162436/1‑149 (MQ=255)                  aaaGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCACAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCgcggg                                                                                                                                 <  6:315337/149‑1 (MQ=255)                     gCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCgcgggcgg                                                                                                                              <  8:155064/149‑1 (MQ=255)                     gCCGGCGGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCCCCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCgcgggcgg                                                                                                                              <  5:209040/149‑1 (MQ=255)                         gCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCt                                                                                                                          <  4:161273/149‑1 (MQ=255)                                          aCAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGc                                                                                                         >  7:162730/1‑149 (MQ=255)                                          aCAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGc                                                                                                         >  3:81288/1‑149 (MQ=255)                                           cAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGcc                                                                                                        <  4:81288/149‑1 (MQ=255)                                                    ggATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTggg                                                                                                >  4:114100/1‑148 (MQ=255)                                                    ggATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGc                                                                                               <  3:114100/149‑1 (MQ=255)                                                          cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGGTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAg                                                                                         >  3:153438/1‑149 (MQ=255)                                                          cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGAtt                                                                                                                     >  5:5077/1‑121 (MQ=255)                                                          cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGAtt                                                                                                                     <  6:5077/121‑1 (MQ=255)                                                          cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAg                                                                                         >  2:116334/1‑149 (MQ=255)                                                          cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAg                                                                                         >  7:158071/1‑149 (MQ=255)                                                          cTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGACC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAg                                                                                         >  3:148405/1‑149 (MQ=255)                                                                   ccaccCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGc                                                                                               <  1:101427/134‑1 (MQ=255)                                                                   ccaccCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGc                                                                                               >  2:101427/1‑134 (MQ=255)                                                                       cccAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCAcc                                                                           >  7:113447/1‑149 (MQ=255)                                                                       cccAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCAcc                                                                           >  3:155452/1‑149 (MQ=255)                                                                         tcgatttatgccccggcgcaagactcaacgcccaaccaccttgggcttgtaggcgcaataccccggccgtggcATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGc                                                                         >  2:224674‑M2/74‑149 (MQ=255)                                                                         catgggggggCCTCGGCGGGGGTTTTGCGCTTACAAGCCCATGGTGGTGGGGGTTTGTGTTTTGGGCGGGGCCATAAATCTAGC‑GCCGGGGGGGGGGCGGTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGc                                                                         <  4:155452/142‑1 (MQ=255)                                                                         cAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGc                                                                         >  2:34387/1‑149 (MQ=255)                                                                          aaGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCt                                                                        >  5:245028/1‑149 (MQ=255)                                                                          aaGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCt                                                                        >  8:136235/1‑149 (MQ=255)                                                                             tttatgccccggcgcaagactcaacgcccaaccaccttgggcttgtaggcgcaataccccggccgtggcATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTcc                                                                      >  2:296823‑M2/70‑148 (MQ=255)                                                                                   CCACGGCCGGTGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCa                                                               >  4:242776‑M1/1‑149 (MQ=255)                                                                                         ccGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTcagccagc                                                         <  8:162730/149‑1 (MQ=255)                                                                                           ggggTATTGCGCATACAAGCCCACGGTGGTTGGGCGTTGTGTCTTGCGCCGGGGCATAAAACGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCgg                                                       <  3:27207/149‑1 (MQ=255)                                                                                            gggTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCggg                                                      >  5:52189/1‑149 (MQ=255)                                                                                            gggTATTGCGCCTACAAGCCCAAGGGGGTTGGGCGTTGTGTCTTGCGCCGGGCCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCggg                                                      <  4:15446/149‑1 (MQ=255)                                                                                                 ttGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGc                                                 <  1:116334/149‑1 (MQ=255)                                                                                                 ttGCGCCTACAAGCCAAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGc                                                 <  5:109394/149‑1 (MQ=255)                                                                                                    cgcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCggg                                                      <  1:196018/141‑1 (MQ=255)                                                                                                    cgcCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCggg                                                      >  2:196018/1‑141 (MQ=255)                                                                                                         caaccaccttgggcttgtaggcgcaataccccggccgtggcATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGTGAAGCTCCGGCaa                                         <  1:224674‑M2/108‑1 (MQ=255)                                                                                                         aCAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTc                                               <  5:341032/143‑1 (MQ=255)                                                                                                         aCAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTc                                               >  6:341032/1‑143 (MQ=255)                                                                                                         aCAAGCCCAACGTCGTTGGGCGTTGACTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCTCGGGCGGCGCTCGATTCTGATGCGAAGCCGAGCTCGCCATGAAGCACTGAA‑CCCACAGCTCCAAATTCACCCAGCGGGGAAGCTCCGGCa                                          >  4:128535/1‑148 (MQ=255)                                                                                                          cAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCCGGGAAGCTCCGGCaa                                         <  8:162436/148‑1 (MQ=255)                                                                                                           aaGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAg                                        >  2:267797/1‑148 (MQ=255)                                                                                                               ccAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACAGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAccc                                   >  2:29648/1‑149 (MQ=255)                                                                                                                             cGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcccc                                  >  1:212836/1‑137 (MQ=255)                                                                                                                             cGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcccc                                  >  1:217639/1‑137 (MQ=255)                                                                                                                             cGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcccc                                  <  2:212836/136‑1 (MQ=255)                                                                                                                             cGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtgg                     >  5:241012/1‑149 (MQ=255)                                                                                                                              gTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTTGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggt                    <  6:245028/149‑1 (MQ=255)                                                                                                                              gTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggt                    <  7:136235/149‑1 (MQ=255)                                                                                                                              gTTGAGTCTTCCGCCGGGGAATAAATCGAGC‑GCCGCGGGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggt                    <  2:173573/149‑1 (MQ=255)                                                                                                                                  aGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCCTCCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggtgg                  <  1:267797/148‑1 (MQ=255)                                                                                                                                   gTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑TCCCCCGCTCCGATTTCAGCAAGCGGGGAAGCTCAGGCAAGCACCCCCCTGATCCGCTGGTGGATg               >  2:273654/1‑149 (MQ=255)                                                                                                                                    tCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcc                                    >  2:194998/1‑127 (MQ=255)                                                                                                                                    tCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcc                                    <  1:194998/127‑1 (MQ=255)                                                                                                                                      ttGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCGGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCAAGCGGGGAAGCTACGGCAAGCACCCGACTGATACGCTGGTGGATGCt             >  6:256909/1‑148 (MQ=255)                                                                                                                                              gggCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAg    >  8:218446/1‑149 (MQ=255)                                                                                                                                                gcATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTc  >  3:194645‑M2/3‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CATGTACCTGGATCGTAAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTCGGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGC‑GCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAA‑CCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTC  >  NC_002947/5746324‑5746615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.