Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,472,878 | T→A | 10.2% | Y226F (TAT→TTT) ‡ | nadD ← | nicotinate‑nucleotide adenylyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,472,878 | 0 | T | A | 10.2% | 136.2 / 6.0 | 49 | Y226F (TAT→TTT) ‡ | nadD | nicotinate‑nucleotide adenylyltransferase |
Reads supporting (aligned to +/- strand): ref base T (26/18); new base A (3/2); total (29/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.29e-01 |
CCTGGATGTCCTGGGCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGACGAACGAAATATTTCCCGCCGGGCCGGA > NC_002947/5472734‑5473026 | ccTGGATGTCCTGGGCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATGAAGGCGCCAGAGGCACCGTCAGTTGGGCGCACGAtata < 1:60465/149‑1 (MQ=255) cTGGATGTCCTGGGCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGt > 5:41374/1‑149 (MQ=255) gATGTCCTGGGCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGTGCGCACGATATAGTTCg > 7:300976/1‑149 (MQ=255) gATGTCCTGGGCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGtt < 7:291529/147‑1 (MQ=255) tGTCCTGGGCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTg < 1:38030/149‑1 (MQ=255) tCCTGGGCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTTCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTgc < 7:168608/148‑1 (MQ=255) gggCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAATCTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTc > 7:22724/1‑149 (MQ=255) ggCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCt < 5:17639/147‑1 (MQ=255) gCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGAACTATATCGTGCGcccaac < 3:255151/149‑5 (MQ=255) ccTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGat < 2:283857/149‑1 (MQ=255) ccTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGat < 4:10852/149‑1 (MQ=255) cTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGata > 5:203168/1‑149 (MQ=255) ttGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTTGTGCGCCTCGata > 6:341772/1‑148 (MQ=255) gACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAg > 6:177821/1‑149 (MQ=255) cGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGc < 6:203168/149‑1 (MQ=255) gTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGc > 1:43239/1‑148 (MQ=255) cAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACg > 6:283813/1‑149 (MQ=255) ccTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCgg > 4:134596/1‑149 (MQ=255) cGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAAcc < 6:41374/148‑1 (MQ=255) cGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCt > 5:68149/1‑149 (MQ=255) gACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTc < 6:68149/149‑1 (MQ=255) cAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCAcc < 2:43239/149‑1 (MQ=255) gTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGa > 1:59263/1‑149 (MQ=255) ttcGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTg > 3:191430/1‑149 (MQ=255) ttcGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGAACTATATCGTgcgc < 1:156006/100‑1 (MQ=255) ttcGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGAACTATATCGTgcgc > 2:156006/1‑100 (MQ=255) cGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGc < 4:191430/148‑1 (MQ=255) gCCGTAAATTTTCTGCTTGGTCATATAAAAATCGATCAACTCGTTGCATG‑AGGCGCCAGAGGCACCGTCAGATGGGCGCACGATATACTTCGTGCGCATCGATATAGGCCAGTACGGAGTCCGGCACCAGGAACCTCAACGAttttcag > 7:265559/1‑145 (MQ=255) cGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCt < 5:283813/149‑1 (MQ=255) tAAATTTTTTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGTTG‑AGGAGCCAGAGGCACAGTCATTTGGGCGGACGATATAGTTAGTGCGCCTCGATATATGCGAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTg < 8:265559/148‑1 (MQ=255) aaTTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGc < 5:177821/148‑1 (MQ=255) ttttCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCcag > 5:169389/1‑149 (MQ=255) tCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGa > 6:148828/1‑148 (MQ=255) atatAAATCTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCt < 8:22724/149‑1 (MQ=255) ataAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCtgt > 1:90388/1‑149 (MQ=255) atcTCGTTCAACTAGTTGGATT‑AGTCGCCAGAGGCACCGGCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAg < 8:300976/147‑1 (MQ=255) gTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGa > 5:659/1‑148 (MQ=255) aaCTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCg > 7:154160/1‑149 (MQ=255) ttGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAgcg > 2:65499/1‑149 (MQ=255) ggCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGc > 5:5469/1‑149 (MQ=255) ccAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGa > 6:257750/1‑149 (MQ=255) ccAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGa < 2:59263/149‑1 (MQ=255) ccGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGacgaac > 2:47666/1‑145 (MQ=255) ccGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGacgaac < 1:47666/145‑1 (MQ=255) gTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGACGAACGAAata > 6:321051/1‑149 (MQ=255) aGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGACGAACGAAATAtt > 4:160917/1‑148 (MQ=255) gTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGACGAACGAAATATTTc > 8:237563/1‑149 (MQ=255) aggCGCACGAACTATATCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGACGAACGAAATATTTCccg > 4:19108/2‑149 (MQ=255) cgcACGAACTATATCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGACGAACGAAATATTTCccgccg > 5:268598/1‑149 (MQ=255) gcACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGACGAAAGAAATATTTCCCgccgg > 5:99815/1‑149 (MQ=255) tataGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGACGAACGAAATATTTCCCGCCGGGCCGGa < 5:148828/149‑1 (MQ=255) | CCTGGATGTCCTGGGCCTTGACGTCTTCCAGCGCTGCCTTGGTCACTGCGACCAGTTCTTCGCCGTAAATTTTCTGCTTGGTCATATAAAACTCGTTCAACTCGTTGGATG‑AGGCGCCAGAGGCACCGTCAGTTGGGCGCACGATATAGTTCGTGCGCCTCGATATAGGCCAGTACGGCGTCCGGCACCAGGAACCTCACCGATTTGCCGCTGGCCAGCAGCTGTCGGATCTGTGTAGCCGACACCGCAAGCGGCGTCTGCCAGACGAACGAAATATTTCCCGCCGGGCCGGA > NC_002947/5472734‑5473026 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |