Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,882,900 C→T 5.9% M98I (ATG→ATA)  PP_5156 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,882,9000CT 5.9% 204.9 / 2.8 68M98I (ATG→ATA) PP_5156hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (32/32);  new base T (2/2);  total (34/34)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01

GCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGACGGTGAAGGTCTTGTCGA  >  NC_002947/5882753‑5883048
                                                                                                                                                   |                                                                                                                                                    
gCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGc                                                                                                                                                      >  3:144942/1‑148 (MQ=255)
    ggCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCa                                                                                                                                                  <  5:60774/148‑1 (MQ=255)
           aTGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTc                                                                                                                                          <  7:171670/149‑1 (MQ=255)
                acaTGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAg                                                                                                                                     >  8:122059/1‑149 (MQ=255)
                  aTGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCg                                                                                                                                   <  8:119271/149‑1 (MQ=255)
                      tACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCAt                                                                                                                               <  3:314130/149‑1 (MQ=255)
                           gTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCa                                                                                                                           <  8:65875/148‑1 (MQ=255)
                              aCCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGt                                                                                                                                           <  2:9342/129‑1 (MQ=255)
                                ccAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGTATCAGGCTGGTCGGCAGCGGCATGTCAGCCAcc                                                                                                                     >  3:192144/1‑149 (MQ=255)
                                ccAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGTATCAGGCTGGTCGGCAGCGGCATGTCAGCCAcc                                                                                                                     >  3:187882/1‑149 (MQ=255)
                                ccAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCAcc                                                                                                                     >  3:312219/1‑149 (MQ=255)
                                 cAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCg                                                                                                                    >  1:57008/1‑149 (MQ=255)
                                    aaTCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCa                                                                                                                           >  5:239324/1‑139 (MQ=255)
                                    aaTCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCa                                                                                                                           <  6:239324/139‑1 (MQ=255)
                                    aaTCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGc                                                                                                                  <  2:315166/148‑1 (MQ=255)
                                    aaTCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGc                                                                                                                  >  1:315166/1‑148 (MQ=255)
                                                 gtgtGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATc                                                                                                    >  4:44647/1‑149 (MQ=255)
                                                       ttGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACcag                                                                                              >  3:255997/1‑149 (MQ=255)
                                                              gggTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCg                                                                                                                                   >  4:59881/1‑105 (MQ=255)
                                                              gggTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCg                                                                                                                                   <  3:59881/105‑1 (MQ=255)
                                                                   aGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGgtggtg                                                                                  >  2:325786/1‑149 (MQ=255)
                                                                    gggTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGc                                                                                 <  4:144942/149‑1 (MQ=255)
                                                                     ggTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGcc                                                                                >  3:36976/1‑149 (MQ=255)
                                                                        aaTGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCgg                                                                             >  6:268627/1‑149 (MQ=255)
                                                                         aTGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGgt                                                                            <  4:87043/149‑1 (MQ=255)
                                                                               gTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCgg                                                                      >  7:66267/1‑149 (MQ=255)
                                                                                tttCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCggg                                                                     <  2:165482/149‑1 (MQ=255)
                                                                                tttCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTAACTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTAGGCAGCGGCATGTCAGCCACCGGCTCTTTGTATACATCCACAAGCAGATGCTGGTGCCAGGTGTGCggg                                                                     >  5:315283/1‑149 (MQ=255)
                                                                                     gTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCATCGGCATGTAAGCCACAGGATCTTTGTCGACATCCACCAGCAGCTGGTTGTGACCGGTGTTCGGGGtttt                                                                >  8:300727/1‑148 (MQ=255)
                                                                                     gTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTg                                                                <  4:238138/149‑1 (MQ=255)
                                                                                      tCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTgg                                                               >  7:311988/1‑149 (MQ=255)
                                                                                      tCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTgg                                                               >  3:298906/1‑149 (MQ=255)
                                                                                         gtgCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTgg                                                               >  1:298632/1‑146 (MQ=255)
                                                                                         gtgCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTgg                                                               <  2:298632/146‑1 (MQ=255)
                                                                                         gtgCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTg                                                                <  3:275192/145‑1 (MQ=255)
                                                                                         gtgCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTg                                                                >  4:275192/1‑145 (MQ=255)
                                                                                         gtgCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCa                                                            >  2:248951/1‑149 (MQ=255)
                                                                                            ccTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCAccc                                                         >  5:192262/1‑149 (MQ=255)
                                                                                              ttGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCg                                                        >  4:194393/1‑148 (MQ=255)
                                                                                                      gTGCAGCACTTGCGGTCCCTTGGGCAGTGCGACGCCGGCCTCTGGTATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGa                                               <  4:192144/149‑1 (MQ=255)
                                                                                                      gTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGTATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGa                                               <  4:187882/149‑1 (MQ=255)
                                                                                                      gTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGa                                               <  2:57008/149‑1 (MQ=255)
                                                                                                       tGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGTCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTg                                                                <  1:195222/131‑1 (MQ=255)
                                                                                                       tGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTg                                                                >  2:195222/1‑131 (MQ=255)
                                                                                                       tGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAg                                              <  1:248951/149‑1 (MQ=255)
                                                                                                         cagcaCTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAgg                                             <  3:44647/148‑1 (MQ=255)
                                                                                                         cagcaCTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAgg                                             <  5:268627/148‑1 (MQ=255)
                                                                                                          agcaCTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGcc                                           <  4:254129/149‑1 (MQ=255)
                                                                                                           gcaCTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGcc                                           >  6:96151/1‑148 (MQ=255)
                                                                                                           gcaCTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGcc                                           <  5:96151/148‑1 (MQ=255)
                                                                                                              cTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGTAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGAtgg                                                                                       >  6:81036/1‑101 (MQ=255)
                                                                                                               ttGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAg                                              >  2:273616/1‑141 (MQ=255)
                                                                                                               ttGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAg                                              <  1:273616/141‑1 (MQ=255)
                                                                                                                   ggTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTc                                  >  4:124256/1‑149 (MQ=255)
                                                                                                                     tCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGa                                <  7:122059/149‑1 (MQ=255)
                                                                                                                     tCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGa                                <  4:255997/149‑1 (MQ=255)
                                                                                                                     tCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGa                                <  7:56041/149‑1 (MQ=255)
                                                                                                                       ccTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATa                              >  6:74137/1‑149 (MQ=255)
                                                                                                                         ttCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATAcc                            >  1:96353/1‑149 (MQ=255)
                                                                                                                         ttCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATAcc                            >  2:298414/1‑149 (MQ=255)
                                                                                                                              cAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACt                       <  2:103092/149‑1 (MQ=255)
                                                                                                                                   cGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGAc                   <  3:194393/148‑1 (MQ=255)
                                                                                                                                    gACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGACgg                 <  6:192262/149‑1 (MQ=255)
                                                                                                                                     aCGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGACGGt                >  7:267279/1‑149 (MQ=255)
                                                                                                                                         cGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGACGGTGAAg            <  1:325786/149‑1 (MQ=255)
                                                                                                                                            ccTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGACGGTGAAGGTc         <  4:312219/149‑1 (MQ=255)
                                                                                                                                             ctctGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGACGGTGAAGGTCt        >  1:319215/1‑149 (MQ=255)
                                                                                                                                                  gCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGa                    >  1:304534/1‑132 (MQ=255)
                                                                                                                                                  gCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGa                    <  2:304534/132‑1 (MQ=255)
                                                                                                                                                   cATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGACGGTGAAGGTCTTGTCGa  >  7:104400/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GCTAGGCTTGAATGGCACATGATACTGGTCACCCAGAATCAGTTGCAGGGTGTGCTTGCCCGGGGTCAGGGTAATGCTGGTTTCGGTCTGTGCCTTGCCGAAGTGCAGCACTTGCGGTCCCTTCGGCAGTGCGACGCCGGCCTCTGGCATCAGGCTGGTCGGCAGCGGCATGTCAGCCACCGGCTCTTTGTCGACATCCACCAGCAGATGGTGGTGCCCGGTGTGCGGGGTTTGGTCACCCGCAGGTTTGAGGCCCATACCCTCGATACCGAACTTGACGGTGAAGGTCTTGTCGA  >  NC_002947/5882753‑5883048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑