| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 392,297 | G→A | 8.8% | L857L (CTG→CTA) ‡ | soxA → | sarcosine oxidase subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 392,297 | 0 | G | A | 8.8% | 255.4 / 10.5 | 91 | L857L (CTG→CTA) ‡ | soxA | sarcosine oxidase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base G (42/41); new base A (3/5); total (45/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.77e-01 | |||||||||||
CCGCGTGTTCCGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACCGCGAAGACTGCGTGCGT > NC_002947/392150‑392444 | ccGCGTGTTCCGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACACCGTACTGCAC‑C‑GAGACCATGCACGTACTGc < 4:56057/149‑1 (MQ=255)acgcgTGTTCCGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGTCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGc < 3:221077/148‑1 (MQ=255) cgcgTGTTCCGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCg > 3:116985/1‑149 (MQ=255) gtgtTCCGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGc < 7:174470/149‑1 (MQ=255) tgtTCCGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCa < 4:116985/149‑1 (MQ=255) ttCCGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCTTCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGCAGTACGTGCatg < 1:275148/149‑3 (MQ=255) ttCCGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCATGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGCAGTACGTGCatg < 1:259592/149‑3 (MQ=255) cGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCagag > 6:256032/1‑147 (MQ=255) cGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGCAGTACGTGCatggtc < 3:227109/149‑6 (MQ=255) tATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGAGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCAGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAgg > 8:267661/1‑149 (MQ=255) tATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGACAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAgg < 8:198727/149‑1 (MQ=255) tctcGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGc > 5:55664/1‑149 (MQ=255) gTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTtca > 3:2078/1‑149 (MQ=255) gTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTtc < 3:272646/148‑1 (MQ=255) cACCGGCGAGCTGTCGTACGATGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTtcatc < 4:34116/148‑1 (MQ=255) aCCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTcatcat > 2:106204/1‑149 (MQ=255) ccGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCatcatc < 6:159983/149‑1 (MQ=255) cGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCg < 5:335373/149‑1 (MQ=255) gCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTg < 5:256032/149‑1 (MQ=255) cGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTgg < 5:132179/149‑1 (MQ=255) aGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGc < 5:122176/149‑1 (MQ=255) cGAAGTGAACGTGCAGGCCAACTACACCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACAcc < 7:258793/148‑1 (MQ=255) gAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCatcatc > 1:91342/1‑132 (MQ=255) gAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCatcatc < 2:91342/132‑1 (MQ=255) gAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGa > 3:57309/1‑149 (MQ=255) gAAGTGAACGTCCAGGCCAACTACGCCATGGGAGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACACCGTACGGCAC‑A‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGacacaca > 2:11940/1‑146 (MQ=255) gTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATgg < 7:267661/149‑1 (MQ=255) aaCGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTc > 4:90414/1‑149 (MQ=255) cGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCTAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGTAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGa < 5:285862/149‑1 (MQ=255) gtccacgCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAAACAGACCCCGTACGGCAC‑A‑GAGACCATGCACGTAAAGAGTGCAGAGAAGGGCTTCATCATAGTGGTCCAGGACAACGAAGGTACGa > 8:117231/7‑148 (MQ=255) cAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCACTCTGAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGAt < 1:106204/148‑1 (MQ=255) gCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAAccc > 6:204200/1‑149 (MQ=255) aaCTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGga > 3:208496/1‑149 (MQ=255) aaCTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGga > 4:156801/1‑149 (MQ=255) aCTACGACATGGTCGTGCTGGAACAGATCATCGAGGCCTTCTAGAAGTACAACGTGAACCCGTACGTCAA‑C‑GAGACCATGCACGTACTGCTTGAAGAGAAGGGCTTCATCATCGTGGTCCAGGACAAGGATGGTTCGATGAACCCGgac < 7:117231/149‑1 (MQ=255) ccATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCt > 2:113650/1‑148 (MQ=255) cATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGc < 7:278155/97‑1 (MQ=255) cATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGc > 8:278155/1‑97 (MQ=255) cATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGTCACCGATGGTTCGATGAACCCGGACGACCTGa < 1:212250/149‑1 (MQ=255) cATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGgac < 7:3912/142‑1 (MQ=255) cATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGgac > 8:3912/1‑142 (MQ=255) aTGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGaa > 2:8341/1‑149 (MQ=255) tGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAAc < 4:2078/149‑1 (MQ=255) tGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAAc < 2:190864/149‑1 (MQ=255) gCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACACCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACAt > 7:307356/1‑148 (MQ=255) cTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCGCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGAt > 1:65075/1‑114 (MQ=255) cTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGAt < 2:65075/114‑1 (MQ=255) tGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACAGCCTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACAACGATGGTTCGATGAACCCGGACGACCTGAACATGATCTgg > 6:59757/1‑149 (MQ=255) aaCAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGc < 3:90414/149‑1 (MQ=255) aaCAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGc < 4:57309/149‑1 (MQ=255) atcatcGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTgg > 2:190083/1‑149 (MQ=255) atcatcGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTgg > 7:194492/1‑149 (MQ=255) atcatcGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTgg < 3:156801/149‑1 (MQ=255) atcGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCg > 1:248859/1‑149 (MQ=255) tcGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACAt < 5:169905/130‑1 (MQ=255) tcGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACAt > 6:169905/1‑130 (MQ=255) tcGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGAGCAGAGAAGGGCTTCATCATAGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCg > 1:268739/1‑148 (MQ=255) ggCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTg < 1:15904/82‑1 (MQ=255) ggCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTg > 2:15904/1‑82 (MQ=255) ggCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGtt < 4:295726/135‑1 (MQ=255) ggCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGtt > 3:295726/1‑135 (MQ=255) gCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCg > 5:122659/1‑149 (MQ=255) gaagTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTgg > 5:33980/1‑132 (MQ=255) gaagTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTgg < 6:33980/132‑1 (MQ=255) ccTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGacac > 4:178814/1‑75 (MQ=255) ccTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGacac < 3:178814/75‑1 (MQ=255) gACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCTCAACAAGACGTTCTCGTGGATCGGcc > 2:89362/1‑149 (MQ=255) gACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGcc > 8:109127/1‑149 (MQ=255) cGTACGGGAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGTGCTTCATCATAGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAAAATGAGCTGTTGCGTTGGCCGCAACAAGCCGTTCTCTAGCATCGGACTCCGt > 6:345223/1‑149 (MQ=255) cGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGt > 1:201142/1‑149 (MQ=255) gTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTg > 5:166128/1‑149 (MQ=255) gTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTg > 5:166124/1‑149 (MQ=255) cGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCa < 2:248859/149‑1 (MQ=255) cGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCa < 6:166128/149‑1 (MQ=255) cGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCa < 6:166124/149‑1 (MQ=255) ggCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACTAGCCGTTCTCGTGGATCGGCCTGCGTGGCAt < 1:34504/149‑1 (MQ=255) c‑GAGACCATGCACGTACTGGGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGGTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAAcc < 1:11940/149‑1 (MQ=255) c‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAAcc < 4:208496/149‑1 (MQ=255) gagaCCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACcg < 7:109127/149‑1 (MQ=255) aCCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACcgcg > 7:215230/1‑148 (MQ=255) ccATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACCGCGaa < 6:122659/149‑1 (MQ=255) tctGCACGCAGTACGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACcgcg > 2:201861/3‑146 (MQ=255) ctGCACGCAGTACGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCTTGGATCg < 8:274040/123‑1 (MQ=255) ctGCACGCAGTACGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCg > 7:274040/2‑124 (MQ=255) ctGCACGCAGTACGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCg < 6:164925/123‑1 (MQ=255) ctGCACGCAGTACGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCg > 5:164925/2‑124 (MQ=255) cACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACCGCGAAGACtg > 8:198990/1‑149 (MQ=255) cGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACCGCGAAGACtgcg < 3:142482/149‑1 (MQ=255) gTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACCGCGAAGACtgcgt > 3:303954/1‑149 (MQ=255) aCTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACCGCGAAGACtgcgtgc > 7:119510/1‑149 (MQ=255) tGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACCGCGAAGACTgcgtgcgt > 2:229721/1‑149 (MQ=255) | CCGCGTGTTCCGTATCTCGTTCACCGGCGAGCTGTCGTACGAAGTGAACGTGCAGGCCAACTACGCCATGGGCGTGCTGGAACAGATCATCGAGGCCGGCAAGAAGTACAACCTGACCCCGTACGGCAC‑C‑GAGACCATGCACGTACTGCGTGCAGAGAAGGGCTTCATCATCGTGGGCCAGGACACCGATGGTTCGATGAACCCGGACGACCTGAACATGAGCTGGTGCGTTGGCCGCAACAAGCCGTTCTCGTGGATCGGCCTGCGTGGCATGAACCGCGAAGACTGCGTGCGT > NC_002947/392150‑392444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |