Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 427,753 | G→T | 8.6% | L16M (CTG→ATG) ‡ | PP_0350 ← | ferrichrome‑iron receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 427,753 | 0 | G | T | 8.6% | 179.4 / 4.0 | 57 | L16M (CTG→ATG) ‡ | PP_0350 | ferrichrome‑iron receptor |
Reads supporting (aligned to +/- strand): ref base G (22/30); new base T (3/2); total (25/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.45e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAATGGGA > NC_002947/427607‑427900 | gATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAgg < 4:218040/148‑1 (MQ=255) gATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGCGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAggg > 6:15005/1‑149 (MQ=255) ccAAGGCAATGCCGGTCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCAt > 7:141512/1‑148 (MQ=255) ccAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATc < 8:25204/149‑1 (MQ=255) aaGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGCGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAg > 3:180339/1‑149 (MQ=255) aGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAgg > 3:140825/1‑149 (MQ=255) cAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTg < 3:137168/149‑1 (MQ=255) aTGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTTGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCTAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTggg < 2:303882/149‑1 (MQ=255) ggCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCa < 4:140825/149‑1 (MQ=255) gcGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGAt > 3:155436/1‑148 (MQ=255) gTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAATGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGc < 5:20497/147‑1 (MQ=255) gTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCaa < 6:55786/143‑1 (MQ=255) gTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACgg < 1:300547/146‑1 (MQ=255) gTTGAGGGTGGTGGCCAGGGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCaa < 8:60220/143‑1 (MQ=255) gggTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGc < 1:177451/142‑1 (MQ=255) gggTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGc > 2:177451/1‑142 (MQ=255) ggCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGata < 7:307956/124‑1 (MQ=255) ggCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGata > 8:307956/1‑124 (MQ=255) ggCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATgcggc > 2:47302/1‑149 (MQ=255) gCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATgcggcg > 3:273341/1‑149 (MQ=255) gCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATgcggcg < 4:273341/149‑1 (MQ=255) ttttGGCGCGGTGGGCCTGTTGTTTGCGCGGGTAGTGGTTTTGCCGGCTGCGAACAAGGCACGGCTGGGCCTCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGcggcgg < 4:262789/145‑1 (MQ=255) tGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTcc > 3:229405/1‑149 (MQ=255) ggCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACggg < 5:40810/147‑1 (MQ=255) ggCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGCCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGt > 5:142636/1‑148 (MQ=255) tAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGtgcttgc < 1:16574/149‑1 (MQ=255) tAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGtgcttg < 4:229405/148‑1 (MQ=255) gACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCtt < 1:47302/149‑1 (MQ=255) gACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCtt > 1:82036/1‑149 (MQ=255) aCGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTg < 8:141512/149‑1 (MQ=255) ggATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGat > 5:25770/1‑84 (MQ=255) ggATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGat < 6:25770/84‑1 (MQ=255) aTTGCTCGGCGGCGAACGAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGACACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagc > 5:122585/1‑149 (MQ=255) ttGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCATGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagcg < 5:177833/149‑1 (MQ=255) tGCTCGGCGGCGAACATGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCcgagcg < 7:86824/148‑1 (MQ=255) cgAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGaaaa < 4:180339/149‑1 (MQ=255) cgAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGaaaa < 5:15005/149‑1 (MQ=255) cgAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGaaaa < 2:82036/149‑1 (MQ=255) gAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGaaaa < 1:120720/148‑1 (MQ=255) gAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAg > 6:300490/1‑149 (MQ=255) gCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCt > 1:237230/1‑136 (MQ=255) gCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCt < 2:237230/136‑1 (MQ=255) aGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCtt > 1:240059/1‑120 (MQ=255) aGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCtt < 2:240059/120‑1 (MQ=255) gggCTGGTCAGCGGGGCAGCCAGGCCGAGTGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGt > 1:193135/1‑149 (MQ=255) aGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGaa > 1:10691/1‑148 (MQ=255) cAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt > 6:318080/1‑148 (MQ=255) ccAGCCTGA‑TGGCCCTGGCCATCGGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTgag > 3:66741/1‑148 (MQ=255) cAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGaa > 2:69717/1‑149 (MQ=255) gCCGA‑TGGCCAGGGCCATCAGGCTGGGGGGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGt < 3:250593/117‑1 (MQ=255) gCCGA‑TGGCCAGGGCCATCAGGCTGGGGAGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGt > 4:250593/1‑117 (MQ=255) cctgA‑TGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt > 6:327845/4‑141 (MQ=255) cctgA‑TGGCCCTGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATAtt < 5:327845/138‑1 (MQ=255) ctgA‑TGGCCCTGGCCATCGGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAattat > 2:108819/3‑149 (MQ=255) gA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGACATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTAttt < 1:245810/149‑1 (MQ=255) a‑TGGCCCTGGCCATCGGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAattatt < 4:66741/147‑1 (MQ=255) a‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTa < 4:155436/149‑1 (MQ=255) gCCAGGGCCATCAGGCGGGGGCGCAGGATATGATCACCGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAAt < 8:282674/148‑1 (MQ=255) aGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAATGGGa > 4:316561/1‑149 (MQ=255) | GATGGCCAAGGCAATGCCGGCCTGGCTGGCGATCTGGTTGAGGGTGGTGGCCAGTGGCGCGCTGGGCAGGTTGTAGGCGCGCGACGTGGATTGCTCGGCGGCGAACAAGGCAGGGCTGGTCAGCGGGGCAGCCAGGCCGA‑TGGCCAGGGCCATCAGGCTGGGGCGCAGGATATGATCAACGGCACGGGACATGCGGCGGTTCCTCGACGGGTAAGTGCTTGCTGCTTCCTTGCCGAGCGAGATCTGAAAAGTGACAGGGTGAATCTGAAAAATATTGAGAATTATTTAATGGGA > NC_002947/427607‑427900 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |