Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	537,461	T→A	9.1%	noncoding (57/66 nt)	PP_mr07 →	P26 ncRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	537,461	0	T	A	9.1%	202.4 / 5.4	70	noncoding (57/66 nt)	PP_mr07	P26 ncRNA
Reads supporting (aligned to +/- strand):  ref base T (35/28);  new base A (5/2);  total (40/30)
Fisher's exact test for biased strand distribution p-value = 6.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGGTTGTAGCTGAAGGCGTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCGGGAGAAGCCAAACAAGCAGGTGACCAAG  >  NC_002947/537314‑537609                                                                                                                                                    |                                                                                                                                                     aGGTTGTAGCTGAAGGCGTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATg                                                                                                                                                     >  3:148973/1‑149 (MQ=255)   gTTGTAGCTGAAGGCGTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGcc                                                                                                                                                   >  8:78202/1‑149 (MQ=255)      gTAGCTGAAGGCGTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCAcc                                                                                                                                                >  2:90966/1‑149 (MQ=255)         gCTGAAGGCGTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGc                                                                                                                                             >  3:255530/1‑149 (MQ=255)             aaGGCGTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCttt                                                                                                                                         >  4:303633/1‑149 (MQ=255)             aaGGCGTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCCGGTGGCATAAGCCACCAGccat                                                                                                                                          >  2:178694/1‑146 (MQ=255)              aGGCGTTTCGAAAGAAGCCGCTGAAGACGCAAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCCGGTGGCATAAGCCACCAGccatca                                                                                                                                        <  1:178694/149‑5 (MQ=255)                gCGTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCCAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGGTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTc                                                                                                                                      <  5:314581/149‑1 (MQ=255)                 cGTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTcc                                                                                                                                     <  7:78202/149‑1 (MQ=255)                  gTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCATAAGCCACCAGc                                                                                                                                             <  2:94242/140‑1 (MQ=255)                  gTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCATAAGCCACCAGc                                                                                                                                             >  1:94242/1‑140 (MQ=255)                        aaaGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTAtt                                                                                                                               <  2:277236/148‑1 (MQ=255)                        aaaGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATtg                                                                                                                              <  7:118143/149‑1 (MQ=255)                         aagaagCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATtgg                                                                                                                             >  7:259654/1‑149 (MQ=255)                         aagaagCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATtgg                                                                                                                             <  4:148973/149‑1 (MQ=255)                             agCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTGGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTCCCGTTATTGGTGGc                                                                                                                         <  6:277470/149‑1 (MQ=255)                                cGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCgg                                                                                                                      >  8:220715/1‑149 (MQ=255)                                     aaGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAgg                                                                                                                 >  6:88554/1‑149 (MQ=255)                                     aaGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAgg                                                                                                                 >  2:82245/1‑149 (MQ=255)                                     aaGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATCCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAgg                                                                                                                 >  7:12784/1‑149 (MQ=255)                                      aGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGc                                                                                                                         >  4:308772/1‑140 (MQ=255)                                      aGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGc                                                                                                                         <  3:308772/140‑1 (MQ=255)                                      aGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGc                                                                                                                <  6:50173/149‑1 (MQ=255)                                          gCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGt                                                                                                            <  3:91438/149‑1 (MQ=255)                                            tAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCAc                                                                                                                                                 >  4:302482/1‑110 (MQ=255)                                            tAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCAc                                                                                                                                                 <  3:302482/110‑1 (MQ=255)                                              agaagaagCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTccc                                                                                                         >  8:202056/1‑148 (MQ=255)                                               gaagaagCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGa                                                                                                       <  1:216915/149‑1 (MQ=255)                                                aagaagCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGAt                                                                                                      <  5:88554/149‑1 (MQ=255)                                                  gaagCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATaa                                                                                                    >  2:304148/1‑149 (MQ=255)                                                    agCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCTAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAAc                                                                                                   <  6:57052/148‑1 (MQ=255)                                                             aagCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGc                                                                                            >  8:86234/1‑146 (MQ=255)                                                                cAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGaca                                                                                      >  1:321689/1‑149 (MQ=255)                                                                       tAACGTCGTGCTGACTTATTCTCGACGTTGCGTTGCCTGCCTGAGCGTTGCGCGAACGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTTTTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCaa                                                                                          <  7:211650/138‑1 (MQ=255)                                                                       tAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCAtgt                                                                               >  3:127503/1‑149 (MQ=255)                                                                       tAAAGTCGAGCTGAAGTAATCTCGACCATGCGAAGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTAAGCCACCGGCCATTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCCAAAACGACCGGCAAGacaacggcag                                                                               >  8:211650/1‑142 (MQ=255)                                                                         aaGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTAt                                                                                                                                <  1:60898/98‑1 (MQ=255)                                                                         aaGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCAtgt                                                                               <  1:90966/147‑1 (MQ=255)                                                                         aaGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATgtgg                                                                             <  1:304148/149‑1 (MQ=255)                                                                         aaGTCGAGCTGAAGTAATCTCGACCTTGCGATGCAAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTAt                                                                                                                                >  2:60898/1‑98 (MQ=255)                                                                            tCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATgtgggtg                                                                          >  1:91888/1‑149 (MQ=255)                                                                                  tGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCa                                                                     >  3:97326/1‑148 (MQ=255)                                                                                    aaGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAAc                                                                  <  7:220715/149‑1 (MQ=255)                                                                                         aTCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAg                                                              <  4:127503/148‑1 (MQ=255)                                                                                          tctcGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAggg                                                            >  7:11968/1‑149 (MQ=255)                                                                                              gACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGttt                                                        <  4:255530/149‑1 (MQ=255)                                                                                                ccTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGc                                                      <  3:303633/149‑1 (MQ=255)                                                                                                    gCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGa                                                  >  6:13830/1‑149 (MQ=255)                                                                                                      gATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGAtt                                                >  6:313157/1‑149 (MQ=255)                                                                                                      gATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGAtt                                                >  6:326136/1‑149 (MQ=255)                                                                                                          ccAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCt                                            >  7:66377/1‑149 (MQ=255)                                                                                                          ccAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCAACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGTTCCCGATAACGAGCTGCaa                                                                                          >  3:152024/1‑103 (MQ=255)                                                                                                           cAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATCCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTg                                           <  8:12784/149‑1 (MQ=255)                                                                                                              ccTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGgct                                        >  1:244032/1‑149 (MQ=255)                                                                                                                tGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGgctgc                                      >  2:177957/1‑149 (MQ=255)                                                                                                                tGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGgctg                                       >  5:105909/1‑148 (MQ=255)                                                                                                                 gAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGgct                                        <  6:133916/146‑1 (MQ=255)                                                                                                                 gAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGgct                                        >  5:133916/1‑146 (MQ=255)                                                                                                                      ttGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTccctc                                >  5:296372/1‑147 (MQ=255)                                                                                                                         aGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCgg                             <  8:259654/149‑1 (MQ=255)                                                                                                                         aGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCgg                             <  5:313157/149‑1 (MQ=255)                                                                                                                           cGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTTCTCCcggcgg                             >  6:20084/1‑147 (MQ=255)                                                                                                                                 gCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCGGGAGAAGcc                     <  1:82245/149‑1 (MQ=255)                                                                                                                                        gccggtggCATAAGCCACCAGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCGGGAGAAGCCAAACAAg              >  6:155587/4‑149 (MQ=255)                                                                                                                                        gCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCGGGAGAAGCCAAACAAg              >  3:144915/1‑149 (MQ=255)                                                                                                                                         ccggtggCATAAGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCGGGAGAAGCCAAACAAg              >  8:155671/3‑148 (MQ=255)                                                                                                                                         cTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCGGGAGAAGCCAAACAAGc             <  7:202056/149‑1 (MQ=255)                                                                                                                                                 ttATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCaaa                                                                   <  5:161768/87‑1 (MQ=255)                                                                                                                                                 ttATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCaaa                                                                   >  6:161768/1‑87 (MQ=255)                                                                                                                                                 ttATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCGGGAGAAGCCAAACAAGCAGGTGAc      >  7:237460/1‑148 (MQ=255)                                                                                                                                                    tGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCGGGAGAAGCCAAACAAGCAGGTGACCAAg  >  3:241135/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AGGTTGTAGCTGAAGGCGTTTCGAAAGAAGCCGCTGAAGACGCTAAGAAGAAGCTGGAAGAAGCAGGCGCTAAAGTCGAGCTGAAGTAATCTCGACCTTGCGATGCCAGCCTGAGCGTTGAGCGAAAGGCTGATGGCTGGTGGCTTATGCCACCGGCCTTTTTCCGTTATTGGTGGCCGGTCAGGCCGGTCCCGATAACGAGCTGCAAGACACCCATGTGGGTGGCGCAAACCAAGGGGTTTGCACGATTTTCTGGCTGCTCCCGCCGGGAGAAGCCAAACAAGCAGGTGACCAAG  >  NC_002947/537314‑537609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑