Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 908,829 | A→G | 8.0% | L127P (CTG→CCG) | cra ← | catabolite DNA‑binding transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 908,829 | 0 | A | G | 8.0% | 140.7 / 2.7 | 50 | L127P (CTG→CCG) | cra | catabolite DNA‑binding transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base A (26/20); new base G (2/2); total (28/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01 |
AGCAGGCTGGCGGCCAGCTGGCGGCTGGCATCGCGGTCGTCGCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTCCAGTTGCTTGGCAATGC > NC_002947/908685‑908976 | aGCAGGCTGGCGGCCAGCTGGCGGCTGGCATCGCGGTCGTCGCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCggcagg < 3:21643/147‑1 (MQ=255) gCAGGCTGGCGGCCAGCTGGCGGCTGGCATCGCGGTCGTCGCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCaa < 4:309593/149‑1 (MQ=255) ggCTGGCGGCCAGCTGGCGGCTGGCATCGCGGTCGTCGCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTg < 7:103916/149‑1 (MQ=255) gCTGGCGGCCAGCTGGCGGCTGGCATCGCGGTCGTCGCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTgg > 7:84687/1‑149 (MQ=255) tGGCATCGCGGTCGTCGCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCGGGCAACTGGCAACGAACAGcgcatcgcat > 5:244421/1‑149 (MQ=255) tGGCATCGCGGTCGTCGCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCGGGCAACTGGCAACGAACAGcgcatcgcat > 5:239891/1‑149 (MQ=255) tGGCATCGCGGTCGTCGCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGcgcatcgcat > 8:139921/1‑149 (MQ=255) gtcgCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACgg < 6:153942/148‑1 (MQ=255) cgCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGaa > 1:62428/1‑148 (MQ=255) cTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGTCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAg < 4:80729/149‑1 (MQ=255) aTCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCGGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTtg < 6:239891/149‑1 (MQ=255) aTCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCGGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTtg < 6:244421/149‑1 (MQ=255) aTCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTtg > 3:80477/1‑149 (MQ=255) cACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTtgct > 2:337289/1‑149 (MQ=255) aCCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTtgctg > 4:265359/1‑149 (MQ=255) tgCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGcgctcgc > 5:222426/1‑149 (MQ=255) ggggTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGt < 8:84687/149‑1 (MQ=255) ggggTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGt > 2:230420/1‑149 (MQ=255) gTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTctg > 6:163913/1‑149 (MQ=255) tCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTctgg > 8:13435/1‑149 (MQ=255) cAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTctggct > 8:39902/1‑149 (MQ=255) aCGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGt < 6:222426/149‑1 (MQ=255) cggTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATc < 3:265359/149‑1 (MQ=255) ggTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCggcagg < 1:307881/68‑1 (MQ=255) ggTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCggcagg > 2:307881/1‑68 (MQ=255) ggTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCg > 5:334797/1‑149 (MQ=255) gATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCgctgc < 5:163913/149‑1 (MQ=255) gCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGgc < 3:148173/91‑1 (MQ=255) gCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGgc > 4:148173/1‑91 (MQ=255) gCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTgg < 7:39902/148‑1 (MQ=255) aaTCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTctggctg < 3:297897/132‑1 (MQ=255) aaTCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTctggctg > 4:297897/1‑132 (MQ=255) aaTCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGa > 5:30762/1‑149 (MQ=255) aaTCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGa > 2:5222/1‑149 (MQ=255) aCCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATcag > 5:148268/1‑149 (MQ=255) aCCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATca < 8:8050/148‑1 (MQ=255) aGGCCTTTGTCCTGCAGGTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTg > 6:269370/1‑149 (MQ=255) tGTCCTGCAGCTCGCGGTGGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCcg > 2:113518/1‑149 (MQ=255) ccTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTCGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGATGCAGTTGGCGCTCGCAGTCTGGCTCGTCATCGCTGCTGGCGATCAGCAGCTGCTAGCCGCgg > 2:261314/1‑149 (MQ=255) cTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCg < 2:313986/127‑1 (MQ=255) cTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCg > 1:313986/1‑127 (MQ=255) tGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGgc > 1:49162/1‑149 (MQ=255) tGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGgc > 2:153079/1‑149 (MQ=255) cAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGgc < 1:337289/147‑1 (MQ=255) tCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCgg < 6:228858/141‑1 (MQ=255) tCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCgg > 5:228858/1‑141 (MQ=255) cgGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGcc < 7:139921/149‑1 (MQ=255) ggTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCt > 8:119467/1‑149 (MQ=255) gTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCtt > 8:162342/1‑149 (MQ=255) tAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTg < 6:334797/149‑1 (MQ=255) tCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTCCa < 1:113518/148‑1 (MQ=255) aTCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTCCAGtt < 2:62428/149‑1 (MQ=255) ctGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTCCAGTTGCt < 2:236315/147‑1 (MQ=255) ggcaggcaACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTc < 1:317159/134‑1 (MQ=255) ggcaggcaACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTc > 2:317159/1‑134 (MQ=255) caggcaACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTCCAGTTGCTTGGCAATGc < 1:153079/149‑1 (MQ=255) caggcaACTGGCAACGAACAGCGCAGCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTCCAGTTGCTTGGCAATGc < 1:230420/149‑1 (MQ=255) aggcaACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTCCAGTTGCTTGGc < 8:4408/143‑1 (MQ=255) aggcaACTGGCAACGAACAGCGCATCGCATCGGCGCGCAAGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTCCAGTTGCTTGGc > 7:4408/1‑143 (MQ=255) | AGCAGGCTGGCGGCCAGCTGGCGGCTGGCATCGCGGTCGTCGCTGATCACCGAGCAGAAGTGTGCGGGGTCCAGACGGCGGTCGATGGCAATCACCGGCAGGCCTTTGTCCTGCAGCTCGCGGTAGCTGTCATCTTCTGGCGGCAGGCAACTGGCAACGAACAGCGCATCGCATCGGCGCGCACGGAACAGTTGCTGCAGTTGGCGCTCGCTGTCTGGCTGGTCATCGCTGCTGGCGATCAGCAGCTGGTAGCCGCGGGCGCGTGCGCCTTGCTCCAGTTGCTTGGCAATGC > NC_002947/908685‑908976 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |