Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 909,319 | G→A | 7.0% | intergenic (‑111/‑174) | cra ← / → fruB | catabolite DNA‑binding transcriptional regulator/PTS fructose transporter subunit EI/HPr/IIA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 909,319 | 0 | G | A | 7.0% | 164.8 / 2.7 | 57 | intergenic (‑111/‑174) | cra/fruB | catabolite DNA‑binding transcriptional regulator/PTS fructose transporter subunit EI/HPr/IIA |
Reads supporting (aligned to +/- strand): ref base G (26/27); new base A (2/2); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01 |
ACACACCGGCCAGACGGGCGATATCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTATGTGAATTTCACAACAATACTCCA > NC_002947/909172‑909459 | acacacCGGCCAGACGGGCGATATCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑CCCATGGTCGCAATTGTCCGACAGGATgggg > 6:261171/1‑149 (MQ=255) acCGGCCAGACGGGCGATATCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCTGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCttt > 8:78765/1‑149 (MQ=255) acCGGCCAGACGGGCGATATCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCttt > 3:148144/1‑149 (MQ=255) acCGGCCAGACGGGCGATATCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCttt > 7:226622/1‑149 (MQ=255) aGACGGGCGATATCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGACGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTgg > 2:84259/1‑149 (MQ=255) aCGGGCGATATCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACt > 2:65597/1‑145 (MQ=255) aCGGGCGATATCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACt < 1:65597/145‑1 (MQ=255) gggCGATATCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAg < 1:49224/149‑1 (MQ=255) tCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACGCTCCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATc < 1:84259/148‑1 (MQ=255) gCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAg < 5:85682/148‑1 (MQ=255) ccGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGt > 3:46788/1‑149 (MQ=255) cGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTc < 7:78765/149‑1 (MQ=255) cGAATTTTCCTTGTTATTACCGGAGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCAGTc > 8:278765/1‑149 (MQ=255) aTTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTg < 4:284187/148‑1 (MQ=255) ttttCCTTGTTATTACCGGGGCTGCCTGAAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGt > 1:194343/1‑149 (MQ=255) cTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGa < 2:194343/148‑1 (MQ=255) ttattaCCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTaaa > 8:157212/1‑149 (MQ=255) tattaCCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTaaa < 3:237762/148‑1 (MQ=255) tattaCCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGAGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTaaa < 5:161476/148‑1 (MQ=255) tattaCCGGAGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTaaa < 7:278765/148‑1 (MQ=255) attaCCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTa > 7:97320/1‑104 (MQ=255) attaCCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTa < 8:97320/104‑1 (MQ=255) attaCCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAAc < 8:42500/148‑1 (MQ=255) cTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGc < 7:157212/149‑1 (MQ=255) gTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTCGTCAGATTAAACGTTTCAGCTGCCGAAtt > 6:13713/1‑149 (MQ=255) tAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAAttt > 7:72590/1‑149 (MQ=255) ggCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCt > 6:72599/1‑149 (MQ=255) ggACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCt < 8:226622/149‑1 (MQ=255) ggTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTg < 4:148144/149‑1 (MQ=255) ggTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTg < 8:72590/149‑1 (MQ=255) cccGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCcgcg > 7:235570/1‑148 (MQ=255) caggTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCgcgc > 6:298298/3‑148 (MQ=255) ggTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAg > 3:260705/1‑149 (MQ=255) gTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATAGTCCGACAGGATGGGGCTTTTTACTGGGCAGAATATCGAGTAACGTGGCCTTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTATCTGCCTCGGCTGCCACCCGCGCAAgg > 5:39698/1‑149 (MQ=255) cAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGtt < 4:260705/148‑1 (MQ=255) aGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGAt > 6:185789/1‑95 (MQ=255) gCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGc < 5:52714/147‑1 (MQ=255) gCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGc > 6:52714/1‑147 (MQ=255) tCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAAc > 3:151832/1‑149 (MQ=255) gcgcAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGc > 4:117769/1‑149 (MQ=255) gcAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGAGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGccc > 8:19166/1‑149 (MQ=255) gcAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGAGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGccc > 8:14195/1‑149 (MQ=255) aGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCtt > 3:316885/1‑149 (MQ=255) gacg‑acCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCttt < 5:341065/149‑1 (MQ=255) gacg‑acCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCttt < 5:240999/149‑1 (MQ=255) gacg‑acCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCtt > 6:341065/1‑148 (MQ=255) acg‑acCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTa < 5:298298/149‑1 (MQ=255) cg‑acCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTAt < 3:117769/149‑1 (MQ=255) acCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCTTCTTGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTAtgt < 5:13713/149‑1 (MQ=255) aTTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTATGTGaa > 3:181128/1‑149 (MQ=255) ttGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTATGTGAAt > 5:246667/1‑149 (MQ=255) ttGTCGCAATTGTCCGACAGCATTGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGGCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTATGTGAAt < 4:283755/149‑1 (MQ=255) cGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTATGTGAATTTca > 3:155379/1‑149 (MQ=255) gCAATTGTCCGACAGGATGGAGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTATGTGAATTTca < 7:19166/148‑1 (MQ=255) gCAATTGTCCGACAGGATGGAGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTATGTGAATTTca < 7:14195/148‑1 (MQ=255) gTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTATGTGAATTTCAcaacaa < 4:41753/148‑1 (MQ=255) cAGGATGGGGGTTTTTACTGGGCAGATTTTCGAGTTACTTGGCCGTCTGGTCTGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGTGTGCCACCGGCGCAAGGTTGCTGAACTGGCCCTTTATGTGAATTTCACAACAATACTCCa < 6:39698/149‑1 (MQ=255) cAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTATGTGAATTTCACAACAATACTCCa < 4:46788/149‑1 (MQ=255) | ACACACCGGCCAGACGGGCGATATCGCTGAGTTTCACCGAATTTTCCTTGTTATTACCGGGGCTGCCTGTAAGGCCGGACCGGGTAGTTTGACCCGGTACAGGCATCACGCGCAGACG‑ACCATTGTCGCAATTGTCCGACAGGATGGGGCTTTTTACTGGGCAGATTATCGAGTAACGTGGCCGTCTGGTCAGATTAAACGTTTCAGCTGCCGAATTTTCTGCCTCGGCTGCCACCCGCGCAAGGTTGCTGAACTGGCCCTTTATGTGAATTTCACAACAATACTCCA > NC_002947/909172‑909459 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |