Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,232,736 | G→C | 7.0% | intergenic (‑24/+193) | glpD ← / ← glpR | aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,232,736 | 0 | G | C | 7.0% | 182.1 / 4.1 | 57 | intergenic (‑24/+193) | glpD/glpR | aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR |
Reads supporting (aligned to +/- strand): ref base G (23/30); new base C (2/2); total (25/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.36e-01 |
CAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGGCGCTTG > NC_002947/1232593‑1232884 | cAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAAtg < 8:201716/148‑1 (MQ=255) cAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAAt < 6:288692/147‑1 (MQ=255) cAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAAt < 7:16114/147‑1 (MQ=255) cgcgACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATTCGATGTGAACa < 1:68565/149‑1 (MQ=255) gcgACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACAt > 6:28154/1‑149 (MQ=255) gcggcgTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGtt > 7:186436/1‑149 (MQ=255) gcgTCGGCAGCGATGCCGACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGt < 4:5454/149‑1 (MQ=255) tCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTg < 2:31819/149‑1 (MQ=255) gCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGct > 4:180948/1‑147 (MQ=255) gCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGaaaa < 3:196721/149‑1 (MQ=255) aTGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGt > 2:259994/1‑133 (MQ=255) cccACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTa < 5:28154/148‑1 (MQ=255) cccACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAg < 7:93231/149‑1 (MQ=255) cATTGATGCCACCGCCGATTACGGAAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGaaa > 8:109513/1‑147 (MQ=255) aTTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCaa > 4:131898/1‑146 (MQ=255) aTGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACg > 7:4186/1‑149 (MQ=255) aTGCCACCGCCGATAACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACg > 4:262287/1‑149 (MQ=255) tGCCACCGCCGATAACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGc < 3:262287/149‑1 (MQ=255) gCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGACTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGcc > 1:266954/1‑149 (MQ=255) ccACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCg < 1:226705/149‑1 (MQ=255) ccgccgATTACGGCAAGGTCTTAGCAGTTGTCTGTTGGGGGCTGGGACGATACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTc < 6:33273/149‑1 (MQ=255) ccgccgATTACGGCAAGGTCATAGCTGTTGGCTGTTGGGGGCTGTTAAGAAAGTGGCTGGGACACTGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGtt < 6:58364/117‑1 (MQ=255) ccgccgATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTc < 8:186436/149‑1 (MQ=255) ccgccgATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTCGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTAGtt > 5:58364/1‑117 (MQ=255) aTTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTc < 8:162113/108‑1 (MQ=255) aTTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTc > 7:162113/1‑108 (MQ=255) aCGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCcagt > 7:1452/1‑146 (MQ=255) ggTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCta > 7:313912/1‑148 (MQ=255) gTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCtata < 8:313912/149‑1 (MQ=255) tCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAg < 7:39272/149‑1 (MQ=255) cAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGaaaaaa < 2:266954/149‑1 (MQ=255) ttGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGa < 5:250230/143‑1 (MQ=255) ttGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGa > 6:250230/1‑143 (MQ=255) gggCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGACACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAAc < 1:46091/137‑1 (MQ=255) gggCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAAc > 2:46091/1‑136 (MQ=255) gACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGt < 7:109513/149‑1 (MQ=255) aCTGGCTGGGACACTGGCAAGGCCTCCTGAGGCTTTTCACATCGAATGTGAACATTTATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACAt < 3:180948/149‑1 (MQ=255) gctggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTAc < 8:4186/149‑1 (MQ=255) gctggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTAc < 6:211535/149‑1 (MQ=255) tggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTTAGTCTCTATAGAAAAAACTGATCAAAt > 7:104891/1‑126 (MQ=255) tggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTTAGTCTCTATAGAAAAAACTGATCAAAt < 8:104891/126‑1 (MQ=255) tggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACaa < 3:122808/131‑1 (MQ=255) tggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACaa > 4:122808/1‑131 (MQ=255) gCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCATATGTCAATGAAGTGAACATTTACGAAAATTCTggg < 8:1452/149‑1 (MQ=255) gCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAggg > 3:159358/1‑149 (MQ=255) ggCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTa > 7:103055/1‑149 (MQ=255) ctcctGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTaag > 8:71122/1‑146 (MQ=255) aGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTATGGCTTgg < 3:131898/148‑1 (MQ=255) caatGTTCACATTCGATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGt > 3:246285/4‑149 (MQ=255) tGTTCACATTCGATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGt > 3:321936/1‑146 (MQ=255) tGTTCACATTCGATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGt < 4:321936/146‑1 (MQ=255) ttCACATCGAATGTTAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAgg < 4:159358/148‑1 (MQ=255) ttCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAggg < 8:103055/149‑1 (MQ=255) tCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAgggg > 6:39968/1‑149 (MQ=255) acaTCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGgc > 3:172438/1‑149 (MQ=255) caTCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGgcg < 4:172438/149‑1 (MQ=255) aTCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGgcgc > 5:220605/1‑149 (MQ=255) gAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGGCGCTTg > 1:161517/1‑149 (MQ=255) | CAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGA‑ACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGGCGCTTG > NC_002947/1232593‑1232884 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |