Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,232,736 G→C 7.0% intergenic (‑24/+193) glpD ← / ← glpR aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,232,7360GC 7.0% 182.1 / 4.1 57intergenic (‑24/+193)glpD/glpRaerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR
Reads supporting (aligned to +/- strand):  ref base G (23/30);  new base C (2/2);  total (25/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.36e-01

CAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGGCGCTTG  >  NC_002947/1232593‑1232884
                                                                                                                                               |                                                                                                                                                     
cAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAAtg                                                                                                                                                   <  8:201716/148‑1 (MQ=255)
cAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAAt                                                                                                                                                    <  6:288692/147‑1 (MQ=255)
cAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAAt                                                                                                                                                    <  7:16114/147‑1 (MQ=255)
     cgcgACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATTCGATGTGAACa                                                                                                                                             <  1:68565/149‑1 (MQ=255)
      gcgACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACAt                                                                                                                                            >  6:28154/1‑149 (MQ=255)
             gcggcgTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGtt                                                                                                                                     >  7:186436/1‑149 (MQ=255)
                gcgTCGGCAGCGATGCCGACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGt                                                                                                                                  <  4:5454/149‑1 (MQ=255)
                   tCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTg                                                                                                                               <  2:31819/149‑1 (MQ=255)
                      gCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGct                                                                                                                             >  4:180948/1‑147 (MQ=255)
                         gCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGaaaa                                                                                                                         <  3:196721/149‑1 (MQ=255)
                            aTGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGt                                                                                                                                      >  2:259994/1‑133 (MQ=255)
                               cccACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTa                                                                                                                    <  5:28154/148‑1 (MQ=255)
                               cccACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAg                                                                                                                   <  7:93231/149‑1 (MQ=255)
                                      cATTGATGCCACCGCCGATTACGGAAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGaaa                                                                                                              >  8:109513/1‑147 (MQ=255)
                                       aTTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCaa                                                                                                              >  4:131898/1‑146 (MQ=255)
                                           aTGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACg                                                                                                      >  7:4186/1‑149 (MQ=255)
                                           aTGCCACCGCCGATAACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACg                                                                                                      >  4:262287/1‑149 (MQ=255)
                                            tGCCACCGCCGATAACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGc                                                                                                     <  3:262287/149‑1 (MQ=255)
                                             gCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGACTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGcc                                                                                                    >  1:266954/1‑149 (MQ=255)
                                              ccACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCg                                                                                                   <  1:226705/149‑1 (MQ=255)
                                                 ccgccgATTACGGCAAGGTCTTAGCAGTTGTCTGTTGGGGGCTGGGACGATACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTc                                                                                                <  6:33273/149‑1 (MQ=255)
                                                 ccgccgATTACGGCAAGGTCATAGCTGTTGGCTGTTGGGGGCTGTTAAGAAAGTGGCTGGGACACTGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGtt                                                                                                                                 <  6:58364/117‑1 (MQ=255)
                                                 ccgccgATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTc                                                                                                <  8:186436/149‑1 (MQ=255)
                                                 ccgccgATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTCGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTAGtt                                                                                                                                 >  5:58364/1‑117 (MQ=255)
                                                       aTTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTc                                                                                                                                    <  8:162113/108‑1 (MQ=255)
                                                       aTTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTc                                                                                                                                    >  7:162113/1‑108 (MQ=255)
                                                          aCGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCcagt                                                                                          >  7:1452/1‑146 (MQ=255)
                                                                 ggTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCta                                                                                 >  7:313912/1‑148 (MQ=255)
                                                                  gTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCtata                                                                               <  8:313912/149‑1 (MQ=255)
                                                                   tCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAg                                                                              <  7:39272/149‑1 (MQ=255)
                                                                         cAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGaaaaaa                                                                        <  2:266954/149‑1 (MQ=255)
                                                                                   ttGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGa                                                                    <  5:250230/143‑1 (MQ=255)
                                                                                   ttGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGa                                                                    >  6:250230/1‑143 (MQ=255)
                                                                                       gggCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGACACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAAc                                                                       <  1:46091/137‑1 (MQ=255)
                                                                                       gggCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAAc                                                                       >  2:46091/1‑136 (MQ=255)
                                                                                              gACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGt                                                   <  7:109513/149‑1 (MQ=255)
                                                                                                    aCTGGCTGGGACACTGGCAAGGCCTCCTGAGGCTTTTCACATCGAATGTGAACATTTATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACAt                                             <  3:180948/149‑1 (MQ=255)
                                                                                                        gctggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTAc                                         <  8:4186/149‑1 (MQ=255)
                                                                                                        gctggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTAc                                         <  6:211535/149‑1 (MQ=255)
                                                                                                          tggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTTAGTCTCTATAGAAAAAACTGATCAAAt                                                              >  7:104891/1‑126 (MQ=255)
                                                                                                          tggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTTAGTCTCTATAGAAAAAACTGATCAAAt                                                              <  8:104891/126‑1 (MQ=255)
                                                                                                          tggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACaa                                                         <  3:122808/131‑1 (MQ=255)
                                                                                                          tggGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACaa                                                         >  4:122808/1‑131 (MQ=255)
                                                                                                                    gCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCATATGTCAATGAAGTGAACATTTACGAAAATTCTggg                             <  8:1452/149‑1 (MQ=255)
                                                                                                                    gCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAggg                             >  3:159358/1‑149 (MQ=255)
                                                                                                                        ggCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTa                         >  7:103055/1‑149 (MQ=255)
                                                                                                                           ctcctGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTaag                       >  8:71122/1‑146 (MQ=255)
                                                                                                                                 aGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTATGGCTTgg                 <  3:131898/148‑1 (MQ=255)
                                                                                                                                  caatGTTCACATTCGATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGt               >  3:246285/4‑149 (MQ=255)
                                                                                                                                     tGTTCACATTCGATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGt               >  3:321936/1‑146 (MQ=255)
                                                                                                                                     tGTTCACATTCGATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGt               <  4:321936/146‑1 (MQ=255)
                                                                                                                                       ttCACATCGAATGTTAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAgg           <  4:159358/148‑1 (MQ=255)
                                                                                                                                       ttCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAggg          <  8:103055/149‑1 (MQ=255)
                                                                                                                                        tCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAgggg         >  6:39968/1‑149 (MQ=255)
                                                                                                                                          acaTCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGgc       >  3:172438/1‑149 (MQ=255)
                                                                                                                                           caTCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGgcg      <  4:172438/149‑1 (MQ=255)
                                                                                                                                            aTCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGgcgc     >  5:220605/1‑149 (MQ=255)
                                                                                                                                               gAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGGCGCTTg  >  1:161517/1‑149 (MQ=255)
                                                                                                                                               |                                                                                                                                                     
CAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGGCGCTTG  >  NC_002947/1232593‑1232884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: