| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,278,721 | A→T | 5.5% | intergenic (‑548/+15) | PP_5465 ← / ← PP_1117 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,278,721 | 0 | A | T | 5.5% | 227.1 / 2.9 | 73 | intergenic (‑548/+15) | PP_5465/PP_1117 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (33/36); new base T (2/2); total (35/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 | |||||||||||
ATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGCTACACCATGAGAGATGCCAGCAG > NC_002947/1278578‑1278869 | aTAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACgg > 4:297395/1‑149 (MQ=255) ttCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCaaaa < 5:37675/149‑1 (MQ=255) cTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAg < 8:199292/148‑1 (MQ=255) tgtgCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACg < 4:220419/139‑1 (MQ=255) tgtgCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACg > 3:220419/1‑139 (MQ=255) tgtgCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTATCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAATGCGAAGAAATGCCCGCCATAAAGACGGGCAAAATGa > 6:6167/1‑149 (MQ=255) tgCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGTCTTTATGGCGGGCatttct < 4:244434/146‑6 (MQ=255) tgCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGTCTTTATGGCGGGCatttct < 4:240065/146‑6 (MQ=255) tgCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGTCTTTATGGCGGGCatttct > 3:244434/1‑141 (MQ=255) tgCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGTCTTTATGGCGGGCatttct > 3:240065/1‑141 (MQ=255) gCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTa > 7:185195/1‑149 (MQ=255) cAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTa < 4:88021/148‑1 (MQ=255) cAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTa < 3:297395/148‑1 (MQ=255) aGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCaaaa < 1:174756/141‑1 (MQ=255) aGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCaaaa > 2:174756/1‑141 (MQ=255) aTCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACgg < 4:112923/149‑1 (MQ=255) aTCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACgg < 1:196860/149‑1 (MQ=255) aCTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGc < 8:185195/149‑1 (MQ=255) aCTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGc < 3:63678/149‑1 (MQ=255) ttGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTc > 6:165665/1‑149 (MQ=255) ttGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTc > 8:202702/1‑149 (MQ=255) aaaTGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCAc < 5:165665/149‑1 (MQ=255) gtgGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGCTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCg > 8:209202/1‑149 (MQ=255) cATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCATAAGGATTAGAACGGAGGTTGCTCCCCTTCGTTACCCCACGGa > 7:225578/1‑149 (MQ=255) aTGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGAt > 8:176100/1‑149 (MQ=255) aaTACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGTCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAg > 8:140585/1‑149 (MQ=255) aaTACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAg < 3:241206/149‑1 (MQ=255) aTACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAg > 5:248029/1‑148 (MQ=255) aaGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACaa > 7:113188/1‑149 (MQ=255) tGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGa < 3:47041/133‑1 (MQ=255) tGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGa > 4:47041/1‑133 (MQ=255) gCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCa > 4:259422/1‑149 (MQ=255) aTCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCgg < 7:90490/149‑1 (MQ=255) cGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGACAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGa > 8:160602/1‑148 (MQ=255) ttaaTATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCAt < 2:287532/129‑1 (MQ=255) aaTATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACg > 2:18932/1‑145 (MQ=255) aaTATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACg < 1:18932/145‑1 (MQ=255) aaTATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCa > 2:317545/1‑149 (MQ=255) aaTATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCa > 2:322473/1‑149 (MQ=255) tataACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCAtt < 7:46952/149‑1 (MQ=255) taACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGTCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTga < 7:140585/149‑1 (MQ=255) taACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTga < 1:317545/149‑1 (MQ=255) taACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTga < 1:322473/149‑1 (MQ=255) ccTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTgaga > 2:202415/1‑148 (MQ=255) ccTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTgaga > 2:333761/1‑148 (MQ=255) ccTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGACAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGAc < 7:160602/149‑1 (MQ=255) tactaGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCtgt < 7:202702/149‑1 (MQ=255) actaGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCAtt > 8:307607/1‑136 (MQ=255) actaGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCAtt < 7:307607/136‑1 (MQ=255) actaGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCtgtg > 4:290866/1‑149 (MQ=255) ctaGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCtgtg < 6:248029/148‑1 (MQ=255) ctaGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCtgtg < 6:130652/148‑1 (MQ=255) ctaGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCtgtg < 8:113188/148‑1 (MQ=255) ctaGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTgg < 8:55726/149‑1 (MQ=255) ctaGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTgg < 7:176100/149‑1 (MQ=255) ctaGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTgg > 7:100468/1‑149 (MQ=255) gcgcTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAg > 8:157239/1‑46 (MQ=255) gcgcTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAg < 7:157239/46‑1 (MQ=255) ttGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAAt < 3:290866/147‑1 (MQ=255) cAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGc > 7:311322/1‑149 (MQ=255) ttcttcAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATAGAGACAGCCGGTGGGAAGAATGTAGCGtcc > 2:241850/1‑146 (MQ=255) ttcAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAaca > 7:272070/1‑149 (MQ=255) aaGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTg > 1:298225/1‑149 (MQ=255) aaGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTg < 1:264889/149‑1 (MQ=255) aGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGc < 7:209202/149‑1 (MQ=255) gCGAATAAATGACATCCATAAAGAAGGGAAAAAGTATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACTGATCGATAACAACCATTGCTCCATCGGATACGGCCATTGAGACATCCTGTGGGAAGAATGTAGCGTGCAACACTGCTa < 5:6167/149‑1 (MQ=255) gCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGCTa > 5:234369/1‑149 (MQ=255) agaaATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGCTacac > 1:152544/1‑148 (MQ=255) tGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGCTACACCATgag < 3:259422/149‑1 (MQ=255) tGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGCTACACCATgag < 1:202415/149‑1 (MQ=255) cccGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGCTACACCATgaga < 8:100468/148‑1 (MQ=255) ccATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGCTACACCATGAGAGATGc > 7:11743/1‑149 (MQ=255) tAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGCTACACCATGAGAGATGCcag > 2:76634/1‑149 (MQ=255) aGACGGGCAAAGGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGCTACACCATGAGAGATGCcagcag > 8:242068/1‑149 (MQ=255) | ATAGAGTTCTGTGCAGAAATCCGTCACTTGAAATGTGGCTCAAGGCCATGGAATACAAGGGCTGTAGGCGAATCGGTCTCAATATAACCTCTTCTACTAGCGCTGTTGCAGCTTTCTTCAAGGCGAAGAAATGCCCGCCATAAAGACGGGCAAAAGGATTAGAACGGAGGTTGCTCCACTTCGTTACCCCACGGATCGAGCACAACCATTGCTCCATCGGATACGGCCATTGAGACAGCCTGTGGGAAGAATGTAGCGTGCAACACTGCTACACCATGAGAGATGCCAGCAG > NC_002947/1278578‑1278869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |