| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,327 | A→C | 14.4% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,327 | 0 | A | C | 14.4% | 237.2 / 30.7 | 97 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (42/40); new base C (7/7); total (49/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCCCGAACCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGT > NC_002947/196181‑196465 | aCCCCGAACCCGTCTACCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 1:287199/149‑1 (MQ=11) cccGAACCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 3:65888/145‑1 (MQ=38) cccGAACCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 2:85155/1‑149 (MQ=39) cccGAACCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 5:302688/1‑149 (MQ=39) cccGAACCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa < 5:341092/149‑1 (MQ=39) cccGAACCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa > 2:88460/1‑149 (MQ=39) cccGAACCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACAACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCCTGAT‑CACTTACACCGTAACCCTGAGCAATCCTGCCCAGACTCAGCTGACacag > 4:65888/1‑145 (MQ=11) ccGAACCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACAGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 1:103012/1‑149 (MQ=255) cGAACCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 3:205740/1‑149 (MQ=39) aCCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTg < 4:206385/149‑1 (MQ=39) ccGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc > 6:136047/1‑149 (MQ=39) ccGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc < 8:283303/149‑1 (MQ=39) cGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc > 1:269507/1‑148 (MQ=39) gAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt > 7:47336/1‑138 (MQ=40) gAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt < 8:47336/138‑1 (MQ=40) gAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACAACGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTcc > 7:28154/1‑148 (MQ=255) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg < 8:90076/149‑1 (MQ=39) ggCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACGGTGACCCTGTCCAACGGcc < 8:202399/149‑1 (MQ=37) ggCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCCTGACCCTGACCAATCCTGCCCAGCCGCCGGTGACAGTGACCCTGTCCAACGGc > 7:222237/1‑148 (MQ=255) cAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAc > 1:322582/1‑149 (MQ=39) aGACCACGATCAACGACTCGGTCGACACCACTACCTCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAc < 5:136047/148‑1 (MQ=255) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAc > 8:187267/1‑148 (MQ=39) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt > 8:108141/1‑133 (MQ=40) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt < 7:108141/133‑1 (MQ=40) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 2:210760/1‑149 (MQ=39) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCg > 3:292492/1‑149 (MQ=39) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt < 2:269507/149‑1 (MQ=39) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 2:327316/1‑149 (MQ=39) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATGCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 5:16531/149‑1 (MQ=255) aaCGACTCGGTCGACAACACTACCGCGAACCTGACGGCGAGGCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGAACCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg < 8:60141/148‑1 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 2:27338/149‑1 (MQ=39) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc < 5:213137/149‑1 (MQ=39) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg < 8:150431/149‑1 (MQ=39) tCGGTCGACACCACTACCGCGACCATGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg > 3:291652/1‑149 (MQ=255) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc > 2:166209/1‑148 (MQ=39) tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaag < 4:205740/149‑2 (MQ=38) tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaag < 4:168095/149‑2 (MQ=38) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATGCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaaga > 1:93336/1‑147 (MQ=255) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAc > 3:187721/1‑149 (MQ=25) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAc > 1:48619/1‑149 (MQ=40) acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAcc > 2:79558/1‑149 (MQ=39) caccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTTTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAccc < 5:294181/149‑1 (MQ=38) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg < 4:283029/149‑1 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg > 2:36314/1‑149 (MQ=37) ccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg > 5:197631/3‑148 (MQ=2) tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 1:69264/1‑147 (MQ=11) tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 1:44017/1‑147 (MQ=11) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg > 4:280788/1‑132 (MQ=32) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 3:280788/132‑1 (MQ=32) cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt > 8:104279/1‑116 (MQ=32) cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt < 7:104279/116‑1 (MQ=32) cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAACCGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑c > 2:210653/1‑149 (MQ=255) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGAt > 3:316120/1‑149 (MQ=34) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGAt > 7:264378/1‑149 (MQ=34) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGact > 4:243995/1‑147 (MQ=12) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTg < 1:50487/92‑1 (MQ=33) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTg > 2:50487/1‑92 (MQ=33) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTc > 6:93315/1‑149 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTc < 2:48619/147‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTc < 8:264378/147‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTcc < 1:204511/148‑1 (MQ=255) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGa < 5:93315/149‑1 (MQ=34) gAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGAAAAACCCAGGGCAGCGT‑CGATTTCCAGAccc > 4:232463/1‑149 (MQ=21) gTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCg > 8:298773/1‑145 (MQ=34) gTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCg < 7:298773/145‑1 (MQ=34) gTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCg > 4:308163/1‑148 (MQ=34) gTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCg > 3:207648/1‑148 (MQ=255) gTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAGCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGa < 1:88460/149‑1 (MQ=21) gTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGa > 3:127656/1‑149 (MQ=255) tCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGAc < 3:169766/149‑1 (MQ=255) cACCGAAGGCGGCGTGAC‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa > 1:13792/1‑100 (MQ=18) cACCGAAGGCGGCGTGAC‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 2:13792/100‑1 (MQ=18) aCCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGt < 3:243995/149‑1 (MQ=255) ccGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTc < 3:308163/149‑1 (MQ=34) cGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTc > 8:122867/1‑148 (MQ=34) aaGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTac < 4:291652/149‑1 (MQ=34) aaGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTac < 8:191570/149‑1 (MQ=255) ggcggcGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTacaa < 3:232463/149‑1 (MQ=34) ggcggcGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTacaa < 2:103012/149‑1 (MQ=34) ggcgTGAT‑CACATACACCGTCACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCTGCGAATGACGTCTAcaacaa < 7:132569/149‑1 (MQ=12) cgTGAT‑CACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 3:60587/149‑1 (MQ=255) aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 1:166209/148‑1 (MQ=34) aCTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 8:143490/148‑1 (MQ=255) cTTTCACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGATAGTGACCCTGTCCAACGGCCATACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGAGCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 8:28154/149‑1 (MQ=255) cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 4:316120/149‑1 (MQ=34) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 3:143729/1‑148 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGAACCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 6:132150/1‑148 (MQ=11) cacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc < 2:322582/148‑1 (MQ=34) acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 1:79558/149‑1 (MQ=21) ccGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc < 6:197631/149‑2 (MQ=255) cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtg > 8:239901/1‑149 (MQ=35) aCCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa < 7:239901/148‑1 (MQ=37) aTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc < 1:210760/149‑1 (MQ=37) tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACg > 5:61564/1‑149 (MQ=37) tGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCa > 2:13296/1‑149 (MQ=37) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcgg > 2:75215/1‑149 (MQ=39) cGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGt < 6:61564/149‑1 (MQ=39) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGt > 8:268914/1‑148 (MQ=39) cGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcgg < 6:158860/145‑1 (MQ=39) cGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcgg > 5:158860/1‑145 (MQ=39) | ACCCCGAACCCGAC‑‑GCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGT‑CGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGT > NC_002947/196181‑196465 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |