Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,670,628 | C→A | 8.5% | intergenic (+51/‑44) | rplS → / → PP_1466 | 50S ribosomal protein L19/acyl‑CoA thioesterase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,670,628 | 0 | C | A | 8.5% | 131.5 / 2.2 | 44 | intergenic (+51/‑44) | rplS/PP_1466 | 50S ribosomal protein L19/acyl‑CoA thioesterase |
Reads supporting (aligned to +/- strand): ref base C (20/20); new base A (2/2); total (22/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.77e-01 |
GTGAAACGTCGTGGTGACGTGCGTAAAGCCAAGCTGTACTACCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTACCAAGGCGGTGTTCCCCAATACCACCAACCACCACAACACCCTG > NC_002947/1670485‑1670773 | gTGAAACGTCGTGGTGACGTGCGTAAAGCCAAGCTGTACTACCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCATCCTTCGGgct > 6:284644/1‑149 (MQ=255) aCGTCGTGGTGACGTGCGTAAAGCCAAGCTGTACTACCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCCGAAGGCTGCttt < 6:247611/149‑1 (MQ=255) tcgtGGTGACGTGCGTAAAGCCAAGCTGTACTACCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCtttttt < 8:171506/149‑1 (MQ=255) gtggtgACGTGCGTAAAGCCAAGCTGTACTACCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGc > 4:220340/1‑149 (MQ=255) tggtgACGTGCGTAAAGCCAAGCTGTACTACCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCCGAAGGCTGCttttttctc < 6:172330/149‑4 (MQ=255) ccAAGCTGTACTACCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGgctg > 1:312612/1‑122 (MQ=255) ccAAGCTGTACTACCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGgctg < 2:312612/122‑1 (MQ=255) cAAGCTGTACTACCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAAt < 2:264104/149‑1 (MQ=255) tactacCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGa < 5:95084/146‑1 (MQ=255) tactacCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGAtt < 3:220340/148‑1 (MQ=255) acCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCAt > 1:73513/1‑149 (MQ=255) ccTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGa < 6:145607/141‑1 (MQ=255) ccTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGa > 5:145607/1‑141 (MQ=255) ccTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCAt > 5:259615/1‑148 (MQ=255) cTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCAt > 7:241376/1‑147 (MQ=255) aCCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCg < 6:259615/149‑1 (MQ=255) gTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGAc > 2:323866/1‑149 (MQ=255) tCCGGCAACGCCGCTCGCATCAAGGAAAACCTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCTAGAAAAAAGGAGCCCTCGGGCTGCTTTTTTGCGTTTTGAAACCCCG‑AAATGTGATTGCCATGACGACCCGAGAc < 2:87757/147‑1 (MQ=255) tCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCgaga < 4:168598/147‑1 (MQ=255) gCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAgg > 2:96258/1‑148 (MQ=255) cAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAg < 4:193513/146‑1 (MQ=255) cAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAg > 3:193513/1‑146 (MQ=255) ccGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCa < 1:323866/149‑1 (MQ=255) tCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCAc > 5:301353/1‑149 (MQ=255) tCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCAc > 5:35173/1‑149 (MQ=255) tCAAGGAAAAACTGTCCTGAGTGCAGTTAGCCCGGTGGCCGAGGCAGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTCAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACAAGGAAATCCAGCGCCGCAc > 3:296180/1‑149 (MQ=255) ggtaaaaCTTTCCTGAGTGCAGTTTGCCCGGTGGACGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTTCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGaa < 4:296180/146‑1 (MQ=255) aaCTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTAGGGATGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGAGCAGCACCGAACTGTc > 3:75720/1‑149 (MQ=255) cTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGAcc > 3:238850/1‑149 (MQ=255) gTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCcgcg < 1:96258/149‑1 (MQ=255) gTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTATGAACCCCCGAAAATCTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGGGACCcgcg < 5:284644/149‑1 (MQ=255) gTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTAcc < 2:73513/149‑1 (MQ=255) tttGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTAcc > 3:67238/1‑148 (MQ=255) tttGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTAcc > 3:241866/1‑148 (MQ=255) gCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTACCAAg < 8:241376/148‑1 (MQ=255) ccGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTACCAAgg < 1:122155/147‑1 (MQ=255) cGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTACCAAgg > 2:122155/1‑146 (MQ=255) tGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCcgc > 6:8075/1‑133 (MQ=255) tGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCcgc < 5:8075/133‑1 (MQ=255) gccgccTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTACCAAGGCGGTGTTCCCCAAt < 4:241866/149‑1 (MQ=255) ccgccTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTACCAAGGCGGTGTTCCCCAATa < 6:83028/149‑1 (MQ=255) aacgcaaaaaaGCAGCCCGAAGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTACCAAGGCGGTGTTCCCCAATaccaccaa > 2:205494/6‑149 (MQ=255) aaaGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTACCAAGGCGGTGTTCCCCAATACCACCAACcaccac > 2:86781/1‑148 (MQ=255) cTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTACCAAGGCGGTGTTCCCCAATACCACCAACCACCACAACACCCTg > 8:185891/1‑149 (MQ=255) | GTGAAACGTCGTGGTGACGTGCGTAAAGCCAAGCTGTACTACCTGCGCGACCTGTCCGGCAAAGCCGCTCGCATCAAGGAAAAACTGTCCTGAGTGCAGTTTGCCCGGTGGCCGAGGCCGCCTAGCGAGAAAAAAGCAGCCTTCGGGCTGCTTTTTTGCGTTTTGAAACCCCGAAAATGTGATTGCCATGACGACCCGAGACCAGGAAATCCAGCGCCGCACCGAACTGTCGGTGACCCGCGTTACCAAGGCGGTGTTCCCCAATACCACCAACCACCACAACACCCTG > NC_002947/1670485‑1670773 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |