Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,687,514 | A→T | 7.3% | L30Q (CTG→CAG) | ydcV ← | polyamine ABC transporter permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,687,514 | 0 | A | T | 7.3% | 155.2 / 3.2 | 55 | L30Q (CTG→CAG) | ydcV | polyamine ABC transporter permease |
Reads supporting (aligned to +/- strand): ref base A (25/26); new base T (2/2); total (27/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 |
GATCAAGGTGGCCAGGCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCAGGCGCTTGACGATGGCCAGGTATACCGCGATCAGCACGATTGG > NC_002947/1687369‑1687657 | gATCAAGGTGGCCAGGCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAgg > 1:196213/1‑148 (MQ=255) aTCAAGGTGGCCAGGCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAgg > 2:124666/1‑147 (MQ=255) aTCAAGGTGGCCAGGCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGaa < 5:253617/149‑1 (MQ=255) tCAAGGTGGCCAGGCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAg < 2:196213/149‑1 (MQ=255) aGGTGGCCAGGCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAgat > 5:251509/1‑148 (MQ=255) gTGGCCAGGCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAgatgat < 6:241783/149‑1 (MQ=255) tGGCCAGGCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATc < 8:204599/149‑1 (MQ=255) gCCAGGCAAGCCACATGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCAAATTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTATTCGGTGTTTAAGGCGTAAAGGAAGATGATCAg > 2:264231/1‑149 (MQ=255) cAGGCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGa > 4:243068/1‑149 (MQ=255) ggCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATc < 3:221641/149‑1 (MQ=255) gCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCg > 8:148983/1‑149 (MQ=255) gCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGaa < 1:303440/149‑1 (MQ=255) gCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGaa < 6:124915/149‑1 (MQ=255) aCCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTg < 6:251509/149‑1 (MQ=255) cTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCa < 3:217358/149‑1 (MQ=255) cAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAg < 3:243068/147‑1 (MQ=255) aGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGaa < 4:217473/149‑1 (MQ=255) gACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAg < 1:17421/149‑1 (MQ=255) cTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAgg > 5:29595/1‑149 (MQ=255) gAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACTGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGgccg > 3:319936/1‑149 (MQ=255) gAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACTGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGgccg > 3:314886/1‑149 (MQ=255) gCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGgccgcc > 6:338471/1‑149 (MQ=255) aTCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGgc > 8:34440/1‑149 (MQ=255) tCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAAGGCGCCGCGTCTTCGGTGTTGAAGGCTTACAGTAAGATGATCAGGATCGGGAATGGCAGGAACCGCAACCCGCCCCAGGCCGCCAgg > 1:98010/1‑149 (MQ=255) ggCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAg > 2:222250/1‑149 (MQ=255) ggCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAg > 4:253981/1‑149 (MQ=255) gCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACTGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGc < 4:314886/149‑1 (MQ=255) gCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACTGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGc < 4:319936/149‑1 (MQ=255) cACGTCGATCCACTTCAGGGTAAAGCGCCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCt > 1:3186/1‑149 (MQ=255) cACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCtt < 7:148983/149‑1 (MQ=255) aCGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCttt > 2:105590/1‑149 (MQ=255) cGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGTAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCtttt < 1:264231/149‑1 (MQ=255) gATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCa < 1:124666/148‑1 (MQ=255) aTCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCa > 6:244494/1‑147 (MQ=255) tCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCagag > 1:274063/1‑149 (MQ=255) tCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCaga < 1:286185/148‑1 (MQ=255) tCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCa > 2:286185/1‑146 (MQ=255) ccACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGt > 2:113116/1‑149 (MQ=255) cACTTCAGGGTAAAGC‑CCTTGGTCGGAAAGCGGAA‑‑CGCCGCGTCTTCGGTGGTGAAGGCGTACAGGAATATGCTCAGGCTCGGGAAGTGCCGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGt < 2:259831/148‑1 (MQ=255) aCTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTg > 6:341216/1‑148 (MQ=255) ttCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCAt > 8:96646/1‑149 (MQ=255) ttCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCAt > 1:154604/1‑149 (MQ=255) aGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCg < 2:274063/148‑1 (MQ=255) ggTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGaaa > 7:66984/1‑149 (MQ=255) c‑ccTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCa < 1:105590/149‑1 (MQ=255) ggCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGgcc > 1:113895/1‑93 (MQ=255) ggCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGgcc < 2:113895/93‑1 (MQ=255) ggCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCAGgcgc < 1:222250/148‑1 (MQ=255) gCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCAGGCGCTTGACGATg < 7:34440/149‑1 (MQ=255) gccgcGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCAGGCGCTTGACGATGGCCAGGt < 8:66984/149‑1 (MQ=255) cgcgTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCAGGCGCTTGACGATGGCCAGGta > 6:133308/1‑148 (MQ=255) cgTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCAGGCGCTTGACGATGGCCAGGTATAc < 3:253981/149‑1 (MQ=255) ggTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCAGGCGCTTGACGATGGCCAGGTATACCGCGAt < 5:341216/148‑1 (MQ=255) gAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCAGGCGCTTGACGATGGCCAGGTATACCGCGATCAGCAc > 2:235285/1‑148 (MQ=255) cGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCAGGCGCTTGACGATGGCCAGGTATACCGCGATCAGCACGATTgg < 6:29595/149‑1 (MQ=255) | GATCAAGGTGGCCAGGCAAGCCACCTGCAGCGACAGCTTGATTGCCTCGAGCACATCGGGCCGGGTGAAGGCCACGTCGATCCACTTCAGGGTAAAGC‑CCTTGGGCGGAAAGCTGAA‑‑CGCCGCGTCTTCGGTGTTGAAGGCGTACAGGAAGATGATCAGGATCGGGAAGTGCAGGAACAGCAACCCGCCCCAGGCCGCCAGGCGCAGCCCTGCAGACGCTTTTTCAGAGTGCATCGAAAGCCCCCAGGCGCTTGACGATGGCCAGGTATACCGCGATCAGCACGATTGG > NC_002947/1687369‑1687657 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |