Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,812,309 | G→C | 7.6% | Q37E (CAG→GAG) ‡ | PP_1615 ← | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,812,309 | 0 | G | C | 7.6% | 158.1 / 4.5 | 53 | Q37E (CAG→GAG) ‡ | PP_1615 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (27/22); new base C (2/2); total (29/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.89e-01 |
CCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATCGATTATCCCTGTGTGGCAATAATGTTTTGTCT > NC_002947/1812164‑1812450 | cccATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCg > 1:220608/1‑149 (MQ=255) gcgcAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGAtgt < 2:220608/149‑1 (MQ=255) cgcAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GCAGATCGCCCGGCTgg < 8:91243/145‑2 (MQ=255) cgcAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GCAGATCGCCCGGCTgg > 7:91243/1‑144 (MQ=255) aGCGCTTACTCACGGCCATCCTGCAAGCGTTGGCAATGA‑TGCAGGAAGGTCTCCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGa > 1:85878/1‑149 (MQ=255) cgcTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGAt > 3:38987/1‑148 (MQ=255) gcTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTATCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGa < 6:127770/149‑1 (MQ=255) cTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAg < 1:331389/149‑1 (MQ=255) tCCTCACGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAgg > 2:23582/1‑148 (MQ=255) aCGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAAc < 7:114526/147‑1 (MQ=255) cttCCTGC‑AGCATTGCCAACGCTTGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCGGGCTGATGTGCGATGAGGAAACCCCCAgg > 7:225197/3‑149 (MQ=255) tGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGAt < 5:233277/129‑1 (MQ=255) tGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGAt > 6:233277/1‑129 (MQ=255) gCAAGCGTTCGCAATGC‑TGCAGGAAGCTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCCATACAGCAGGCGCGTTTGCAGGCCGTCCTCCAGACG‑GGCGATCTGCCGCCGGAAGTGCGATGAGCAAACCCCCAGGCGTTcg > 6:68272/1‑149 (MQ=255) cAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GCAGATCGCCCGGCTgga > 6:69662/1‑118 (MQ=255) cAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GCAGATCGCCCGGCTgga < 5:69662/120‑3 (MQ=255) ggCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCGTGGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTcggcggcgg < 1:89646/148‑1 (MQ=255) aaTGC‑TGCAGGAAGGTCTGCCCGGCTTCACTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGt > 3:151543/1‑148 (MQ=255) tgc‑tgcAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGaa < 6:154058/149‑1 (MQ=255) tgcAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTg > 5:96500/1‑149 (MQ=255) cAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTgg < 6:96500/148‑1 (MQ=255) ggAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGGCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGccc < 4:38987/149‑1 (MQ=255) tCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGcc < 7:221265/142‑1 (MQ=255) tCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGcc > 8:221265/1‑142 (MQ=255) tCAGGGTTACCCGGCGGGTGCTGCGATACACCAGGCGCGTTTGTAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAAt > 1:28455/1‑149 (MQ=255) gggTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATtcg < 8:270687/149‑1 (MQ=255) ggTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATtcgt < 1:23582/149‑1 (MQ=255) gTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTgg < 6:204800/120‑1 (MQ=255) gTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTgg > 5:204800/1‑120 (MQ=255) ttACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATtcgtc > 1:151888/1‑148 (MQ=255) ttACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATtcgtc > 2:229731/1‑148 (MQ=255) ccGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAAccccc > 4:136501/1‑88 (MQ=255) ccGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAAccccc < 3:136501/88‑1 (MQ=255) cggcggGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAGACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGcc > 7:212973/1‑149 (MQ=255) gcggGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCtt > 7:35332/1‑149 (MQ=255) cggGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGCGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTc < 4:127394/149‑1 (MQ=255) gggTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTcc < 2:151888/149‑1 (MQ=255) tgcGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCgg > 6:177868/1‑149 (MQ=255) tgcGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCgg > 5:132462/1‑149 (MQ=255) cGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGgc < 1:229731/148‑1 (MQ=255) tACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCTGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGgctgc > 5:23907/1‑148 (MQ=255) gcagGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATc > 4:105583/1‑149 (MQ=255) gcagGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATc > 8:33368/1‑149 (MQ=255) gcgcGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATCGAt > 3:43559/1‑148 (MQ=255) tttGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATCGATTATccc > 3:71854/1‑149 (MQ=255) tttGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATCGATTATccc > 2:174994/1‑149 (MQ=255) cGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATCGATTATCCCTGTGTGGc < 6:23907/149‑1 (MQ=255) gTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATCGATTATCCCTGTGTGGCaa < 4:43559/149‑1 (MQ=255) ccAGCCG‑GGCGATCTGCCGGCTGATGTGAGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTAACATCGTCTGCTCATCGAt > 6:321307/1‑128 (MQ=255) cAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATCGATTATCCCTGTGTGGCAATAATGt > 2:237474/1‑149 (MQ=255) gCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATCGATTATCCCTGTGTGGCAATAATGttt < 8:35332/149‑1 (MQ=255) ccG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATCGATTATCCCTGTGTGGCAATAATGtttt < 3:105583/149‑1 (MQ=255) gCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAAGTGGCCCTATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCTTCGGCTGCTCATCGATTATCCCTGTGTGGCAATAATGTTTTGTCt < 8:225197/149‑1 (MQ=255) | CCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGC‑TGCAGGAAGGTCTGCCCGGCTTCGCTCAGGGTTACCCGGCGGGTGCTGCGATACAGCAGGCGCGTTTGCAGGCGGTCCTCCAGCCG‑GGCGATCTGCCGGCTGATGTGCGATGAGGAAACCCCCAGGCGTTCGGCGGCGGCAGTGAACTGGCCCGATTCGGCCACGGCGACAAATTCGTCGATGCCTTCCCATCGGCTGCTCATCGATTATCCCTGTGTGGCAATAATGTTTTGTCT > NC_002947/1812164‑1812450 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |