Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,871,376 | T→A | 9.6% | L217Q (CTG→CAG) | cobC → | adenosylcobinamide‑phosphate synthase subunit beta |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,871,376 | 0 | T | A | 9.6% | 140.7 / 5.7 | 52 | L217Q (CTG→CAG) | cobC | adenosylcobinamide‑phosphate synthase subunit beta |
Reads supporting (aligned to +/- strand): ref base T (24/23); new base A (2/3); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.64e-01 |
AACACCCCGGCGGACAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCACGTGTTGCGCAGTGCCGGCCTGGCGCC > NC_002947/1871231‑1871523 | aacaCCCCGGCGGACAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAgctgct > 6:47184/1‑149 (MQ=255) acacCCCGGCGGACAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTc < 4:294022/149‑1 (MQ=255) acCCCGGCGGACAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCgg < 1:178929/149‑1 (MQ=255) acCCCGGCGGACAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCgg < 1:184377/149‑1 (MQ=255) cggcggACAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCAGCTCGGccag < 8:141141/149‑3 (MQ=255) cggcggACAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCAGCTCGGccag < 2:283286/149‑3 (MQ=255) gcggACAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCAGCTCGGccaggc < 1:336277/149‑5 (MQ=255) ggACAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGa < 4:88928/149‑1 (MQ=255) cAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCg > 6:261633/1‑149 (MQ=255) cgcCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGAccc > 6:133819/1‑149 (MQ=255) cgcCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGAc < 7:1296/147‑1 (MQ=255) ccGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCgg > 2:208634/1‑149 (MQ=255) cGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCggg > 1:70131/1‑149 (MQ=255) gAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGt > 3:305552/1‑149 (MQ=255) ccGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCACCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTc > 7:281536/1‑126 (MQ=255) ccGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCACCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTc < 8:281536/126‑1 (MQ=255) gggCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGcc > 1:312561/1‑147 (MQ=255) ggCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAg < 2:312561/149‑1 (MQ=255) aTCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCa < 5:47184/148‑1 (MQ=255) tgctgcGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTg > 3:303736/1‑149 (MQ=255) gcTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCtgat < 4:159823/149‑1 (MQ=255) cTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCtgat > 4:225963/1‑148 (MQ=255) gTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCtgatga < 2:177373/147‑1 (MQ=255) gTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATgaga > 2:189241/1‑149 (MQ=255) tttGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCtgatg < 4:155680/145‑1 (MQ=255) tttGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCtgatg > 3:155680/1‑145 (MQ=255) gCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGcc > 8:189502/1‑149 (MQ=255) gCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGc < 1:208634/148‑1 (MQ=255) gCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGACGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGcc > 1:245445/1‑149 (MQ=255) cAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGcc > 6:6999/1‑148 (MQ=255) aaGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCa > 7:116557/1‑149 (MQ=255) cttcGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAgcgcg > 3:328497/1‑149 (MQ=255) gCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAgcgtgcgc > 4:93428/1‑147 (MQ=255) cGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAAc < 5:133819/149‑1 (MQ=255) cGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAAc > 2:296270/1‑149 (MQ=255) ggCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACg < 3:225963/149‑1 (MQ=255) gTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCtg > 6:49023/1‑149 (MQ=255) gcgcCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCtgtg < 8:116557/149‑1 (MQ=255) cgcCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCtgtg < 5:261633/148‑1 (MQ=255) cgcCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCtgtg < 4:303736/148‑1 (MQ=255) gcCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGtgct > 3:26634/1‑149 (MQ=255) cTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCTGCCCCTGGACCGGCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTgcca < 1:189241/149‑1 (MQ=255) cTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCTCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTgcca < 4:13689/149‑1 (MQ=255) cTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTgcca < 4:305552/149‑1 (MQ=255) gccgccGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCcagccagc < 4:26634/148‑1 (MQ=255) ccgccgTACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGTACCGTCAACGGCCCGACCCGGTTGCTGGCCGAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCgg < 4:67944/149‑1 (MQ=255) cacaGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCa > 3:132145/1‑149 (MQ=255) gctgctgcGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCACGTGTTgc > 2:85574/1‑149 (MQ=255) tgcGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCACGTGTTGCGCAGt < 5:49023/149‑1 (MQ=255) tgcGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCACGTGTTGCGCAGt > 3:18750/1‑149 (MQ=255) ccTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCACGTGTTGCGCGGTGCCg > 2:24228/1‑149 (MQ=255) aggggCCGAGCAGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCACGTGTTGCGCAGTGCCg > 2:256918/4‑149 (MQ=255) aggggCCGAGCAGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCACGTGTTGCGCAGTGCCg > 4:108099/4‑149 (MQ=255) gctgctCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCACGTGTTGCGCAGTGCCGGCCTGgcgc > 8:209082/1‑149 (MQ=255) tgctCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCACGTGTTGCGCAGTGCCGGCCTGGCGcc > 8:284164/1‑148 (MQ=255) | AACACCCCGGCGGACAGCGTGGTGGACTGCGCCGAACGCCCGGGGCTGATCGTGCTGCGCTCGTTTGGCAAGTTCTTCGGCTTGGCCGGCGTGCGCCTGGGCTTCGTTGCCGCCGAACACAGCTTGCTGCTGCGCCTGGCCGAGCTGCTCGGCCCCTGGACCGTCAACGGCCCGACCCGGGTGCTGGCCCAGGCCAGCCTGTCTGATGAGACTGCCCAGCGCGCGCAGGCCCAACGCTGTGCTGCTGCCAGCCAGCGGCTTGCGCACGTGTTGCGCAGTGCCGGCCTGGCGCC > NC_002947/1871231‑1871523 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |