| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,032 | C→T | 5.0% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,032 | 0 | C | T | 5.0% | 633.3 / 13.8 | 218 | T846T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (103/104); new base T (8/3); total (111/107) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.37e-01 | |||||||||||
Only 100 of 224 total aligned reads displayed.
CCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAA > NC_002947/196912‑197180 | ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCCTCGAGAACGCCACAg > 6:222726/1‑149 (MQ=14) aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGc > 3:304186/1‑149 (MQ=32) gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCg < 4:138358/149‑1 (MQ=32) cGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCgg > 3:85153/1‑148 (MQ=32) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGCCCG‑TCAGCGTCCCCATCGAGACCGCCACAGGCGGt > 7:139029/1‑148 (MQ=12) cGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAAt < 2:25559/149‑1 (MQ=35) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 5:14453/1‑147 (MQ=34) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 6:69257/149‑1 (MQ=34) cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCTGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 2:132375/148‑1 (MQ=18) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTGCAGACCCCGGCGAATGACGTCTACAACAACGCTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 8:16373/1‑148 (MQ=17) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 4:105959/1‑148 (MQ=32) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa > 7:257811/1‑149 (MQ=32) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAACACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 2:92993/149‑1 (MQ=17) gACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 8:51326/149‑1 (MQ=32) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 7:187267/148‑1 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 7:246456/1‑149 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCAAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 2:31468/1‑149 (MQ=17) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc < 1:161476/149‑1 (MQ=32) tCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc < 1:85155/148‑1 (MQ=17) tCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAccc < 2:44606/148‑1 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGa > 6:287808/1‑148 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCATGACCCCGGCGAATTACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCCAGCAACTTACCCCGaa < 2:234529/149‑1 (MQ=11) cGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc < 7:34935/149‑1 (MQ=33) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 7:217020/149‑1 (MQ=34) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 1:21874/149‑1 (MQ=34) gCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGTTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCg > 1:239539/1‑149 (MQ=21) ccAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa < 1:320380/149‑1 (MQ=34) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 1:176687/1‑127 (MQ=32) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc < 8:257811/149‑1 (MQ=35) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCGCgg > 1:122307/1‑149 (MQ=25) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg < 6:14453/149‑1 (MQ=37) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg < 1:308581/149‑1 (MQ=37) tACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 5:336175/120‑1 (MQ=32) tACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 6:336175/1‑120 (MQ=32) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCTCAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 8:59406/148‑1 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 4:304186/148‑1 (MQ=37) gTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc < 3:124943/149‑1 (MQ=37) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGa > 4:113163/1‑149 (MQ=37) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGa < 6:171191/149‑1 (MQ=37) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGa > 8:300391/1‑149 (MQ=37) gCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGAt < 7:75201/149‑1 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAAc < 5:170799/149‑1 (MQ=37) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTAACCATCGAGAACGCCACAGGAGGTAATTTCGAGAAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTc > 2:327222/1‑149 (MQ=255) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAAc < 5:343147/143‑1 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCgg > 5:310943/1‑149 (MQ=21) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCgg > 1:6743/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCgg > 5:263989/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAACG‑TCAGCGTCACCATCGAGAACGCAACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCgg > 2:179281/1‑149 (MQ=21) ccgccAGCGACGATTTCCACCCCCCGGCGAATGACGTCAACAACAACGGAGCGACCG‑TCAGCGTCACCACCGACAACGCCACAGCCGGAAATTTCGACCAACTCACCCCGAATCCGACCCCGGCTCACACC‑A‑CGATCAACGACTCGGTc < 6:263989/145‑1 (MQ=11) aGGTCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACCACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTc < 6:196168/149‑1 (MQ=21) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTc < 5:188195/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTc > 5:85833/1‑149 (MQ=34) aGCGTCGATTTCCAGACCCAGGAGAATGACGTCTACAACAACGGTTCGACCG‑TCATCGTCACAATAGAGAACGCCACAGGCGTTAATTTCGAGCAACTTACCACTAATCCGACCCAGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATg < 3:27252/148‑1 (MQ=11) gCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGc > 4:142531/1‑148 (MQ=37) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGccac > 3:149873/1‑149 (MQ=39) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCcaccac > 3:237841/1‑149 (MQ=39) tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc < 5:215046/111‑1 (MQ=35) tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc > 6:215046/1‑111 (MQ=35) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGa > 8:81889/1‑149 (MQ=21) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGa > 8:118904/1‑149 (MQ=39) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGa > 6:133345/1‑149 (MQ=39) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAACGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGa > 4:98680/1‑149 (MQ=255) ccccGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTAAGACC‑A‑CGATCAACGAATCGGTCGATGCCACCACAGCGAcc > 8:210020/1‑146 (MQ=255) cccGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATAGAGAACGACACAGGCGGTAATTTCGAGCAACTTACCCAGAATCCGACCACGGCTAAGACA‑A‑CGATCAACGACTCGGTCGAGTCCACCAACGCGACCCTGa > 4:218985/1‑149 (MQ=11) ccGGCGAATGACGTCTACAACAACGGTTCGACTG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc > 5:293949/1‑149 (MQ=21) ccGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc > 4:245960/1‑149 (MQ=39) cGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg < 2:211639/149‑1 (MQ=39) cGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg > 8:7269/1‑149 (MQ=39) ggCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACgg > 8:133783/1‑149 (MQ=39) gCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc < 4:149873/149‑1 (MQ=39) gCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc > 2:102143/1‑149 (MQ=39) gAATGACGTCTACAACAACGGTTCGACTG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa < 7:81889/149‑1 (MQ=21) gAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa < 3:105959/149‑1 (MQ=38) aTGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGc < 7:118904/149‑1 (MQ=37) aCGTCTACAACAACGGTTCGACTG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCg > 3:317126/1‑149 (MQ=21) aCGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGccc < 3:142531/148‑1 (MQ=37) aCGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGccc < 8:246456/148‑1 (MQ=37) cGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCg > 6:186348/1‑142 (MQ=37) cGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGt < 2:77492/149‑1 (MQ=37) gTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa > 8:228682/1‑136 (MQ=37) gTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa < 7:228682/136‑1 (MQ=37) tCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 5:246518/1‑149 (MQ=37) tACAACAACGGTTCGACTG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 2:164088/1‑149 (MQ=21) aacaacGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCTGTCGATGCCACCACCGCGACCCt < 8:32625/128‑1 (MQ=38) aacaacGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 7:52312/1‑149 (MQ=37) acaacGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 4:125076/1‑149 (MQ=37) caacGGTTCGACTG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 7:238497/1‑148 (MQ=21) caacGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGt > 3:248854/1‑105 (MQ=32) caacGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGt < 4:248854/105‑1 (MQ=32) caacGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 5:221349/1‑148 (MQ=37) aacGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 7:290786/1‑148 (MQ=37) cGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTTGGTCACCGAAg > 4:81530/1‑149 (MQ=37) cGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 2:16289/149‑1 (MQ=37) ggTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg < 1:127819/149‑1 (MQ=17) ttCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAg < 1:186540/129‑1 (MQ=38) ttCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 6:310943/149‑1 (MQ=37) gACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCGACCGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 1:102143/148‑1 (MQ=255) ccG‑TCAGCGTCACCTTCGAGAACGCCACAGGCGGTAATTTCGAGGAACTGACCCCGAATCCGACCCCGGCTCAGACC‑T‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 8:169319/148‑1 (MQ=255) cG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc > 6:84055/1‑120 (MQ=39) cG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGtga > 3:131894/1‑147 (MQ=25) | CCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCG‑TCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAA > NC_002947/196912‑197180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |