Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,940,411 | G→C | 8.8% | A289G (GCC→GGC) | PP_1740 ← | beta (1‑6) glucans synthase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,940,411 | 0 | G | C | 8.8% | 172.5 / 5.4 | 56 | A289G (GCC→GGC) | PP_1740 | beta (1‑6) glucans synthase |
Reads supporting (aligned to +/- strand): ref base G (29/22); new base C (2/3); total (31/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.47e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CACGGCGCTGGCCAGCAACCACTGCGGCCAGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTCGCCAATCAGTATGTCCTT > NC_002947/1940263‑1940559 | cACGGCGCTGGCCAGCAACCACTGCGGCCAGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAgg > 3:33853/1‑149 (MQ=255) gcgcTGGCCAGCAACCACTGCGGCCAGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTc < 4:176064/149‑1 (MQ=255) gCCAGCAACCACTGCGGCCAGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCa < 3:3465/148‑1 (MQ=255) gCCAGCAACCACTGCGGCCAGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGCCTTCGATCa < 2:288685/148‑1 (MQ=255) gCCAGCAACCACTGCGGCCAGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGCCTTCGATCa < 8:100739/148‑1 (MQ=255) ccAGCAACCACTGCGGCCAGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAgg < 7:58873/149‑1 (MQ=255) ccAGCAACCACTGCGGCCAGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAgg < 5:108194/149‑1 (MQ=255) cTGCGGCCAGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTACCCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTgcc > 5:274173/1‑149 (MQ=255) aGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTg < 2:75059/149‑1 (MQ=255) cAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGTTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCgg < 5:107063/149‑1 (MQ=255) gTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCa > 5:150653/1‑149 (MQ=255) gCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATg < 1:145527/148‑1 (MQ=255) tCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGcc > 6:185970/1‑149 (MQ=255) cGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCAc > 5:156268/1‑148 (MQ=255) cTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCa > 7:41604/1‑149 (MQ=255) aGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGAt < 4:33853/149‑1 (MQ=255) cACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATg > 2:44059/1‑148 (MQ=255) aCGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATg > 6:58544/1‑147 (MQ=255) tCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGa > 6:90868/1‑149 (MQ=255) cGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGAc > 4:164074/1‑149 (MQ=255) ggTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGAcc < 3:164074/149‑1 (MQ=255) gcgTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCAtt < 2:8726/140‑1 (MQ=255) gcgTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCAtt > 1:8726/1‑140 (MQ=255) cgtcgtATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTg > 6:52006/1‑149 (MQ=255) tcgtATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTggg > 5:288061/1‑149 (MQ=255) tcgtATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTggg < 6:150653/149‑1 (MQ=255) cccccAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCAccgccg > 5:64267/1‑149 (MQ=255) ccAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGc > 1:296167/1‑139 (MQ=255) ccAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGc < 2:296167/139‑1 (MQ=255) ccAGTAACCACCCACCGCGCCCTCATAGGCGCGTTTCCACGGCTCAACGAAGGCATCCATCAGGTTGTAGTGCCAGACATTCCCCTCGCCCATGCCCACCAAGCCAAGGATCAAGCTCGCATCATTCACCCGGCTGCGCACCGCCCttt > 4:287487/1‑149 (MQ=255) cAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTc > 7:160731/1‑149 (MQ=255) aGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAgcgc < 1:81753/116‑1 (MQ=255) aGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAgcgc > 2:81753/1‑116 (MQ=255) ccacccacCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTg > 6:162685/1‑149 (MQ=255) ccccaccGCGCCCTCATTGGCGCGGTTCCAGGGCTGAACGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGCATCCACGGATGAAGCGCGCCTCAGTGACCCGGCTGGGCACCGCCGTTTCGCGTTggc > 6:286645/2‑149 (MQ=255) acccaccGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTggc > 2:236379/1‑149 (MQ=255) ccaccGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCACCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTggcgg > 5:34649/1‑149 (MQ=255) cagcgcACTCATTGGCGCGTTTCCACGTCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCt < 6:339500/147‑1 (MQ=255) ccTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTg < 5:331433/149‑1 (MQ=255) ccTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTg > 3:220468/1‑149 (MQ=255) ccTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTg < 1:44059/149‑1 (MQ=255) cTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTgg > 6:269494/1‑149 (MQ=255) tCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCAATTGCGCTCGGACATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTTACCCGGCTGGGAACCGCCGTTTCGCGTTGTCGGCATTCGCTtgg > 3:309548/1‑149 (MQ=255) aTTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCAATGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGc < 6:156268/148‑1 (MQ=255) gcgTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGc < 3:180434/137‑1 (MQ=255) gcgTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGc > 4:180434/1‑137 (MQ=255) tCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTc < 5:231630/148‑1 (MQ=255) tCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTc < 5:58544/148‑1 (MQ=255) tCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTc < 5:175098/148‑1 (MQ=255) cAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTCGc > 8:249402/1‑148 (MQ=255) cAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTCGc < 8:41604/148‑1 (MQ=255) cTGATCGAAGCCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCATGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTCGCCAATCa > 6:90129/1‑149 (MQ=255) cTGATCGAAGCCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTCGCCAAt > 5:344016/1‑147 (MQ=255) tGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTgg > 4:116997/1‑94 (MQ=255) aTCGAAGCCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCATGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTCGCCAATCAg < 5:90129/147‑1 (MQ=255) tCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGATTCGCCAATCAGTAt > 7:314392/1‑149 (MQ=255) aaGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTCGCCAATCAGTATGTc > 6:289332/1‑149 (MQ=255) gCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTCGCCAATCAGTATGTCCtt > 5:30758/1‑149 (MQ=255) | CACGGCGCTGGCCAGCAACCACTGCGGCCAGTCATGCAGGTTGCTCACGGGCCCTTCGAGCACGCCTTTGTCCTGTCGGTCCGCGTCGTATAGCCCCCAGTAACCACCCACCGCGCCCTCATTGGCGCGTTTCCAGGGCTGATCGAAGGCTTCGATCAGGTTGTAGTGCCAGCCATTGCGCTCGGCCATGGCCACGAAGCCACGGATGAAGCGCGCCTCATTGACCCGGCTGGGCACCGCCGTTTCGCGTTGGCGGCCTTCGCTGGGCCAGCCGGTTTCGCCAATCAGTATGTCCTT > NC_002947/1940263‑1940559 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |