| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,089 | T→C | 11.2% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,089 | 0 | T | C | 11.2% | 653.3 / 58.8 | 260 | N865N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (113/117); new base C (16/13); total (129/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01 | |||||||||||
Only 100 of 261 total aligned reads displayed.
CGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGT > NC_002947/196942‑197237 | ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc > 6:278209/1‑149 (MQ=34) gCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGTTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCg > 1:239539/1‑149 (MQ=21) gCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGTGGTAATTTCGAGCAACTGACCCCGAATCCg > 2:110176/1‑149 (MQ=21) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc < 7:14197/149‑1 (MQ=34) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAccc < 1:97130/149‑1 (MQ=35) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCGCgg > 1:122307/1‑149 (MQ=25) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg < 1:308581/149‑1 (MQ=37) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg < 6:14453/149‑1 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCTCAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 8:59406/148‑1 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 4:304186/148‑1 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 7:224095/148‑1 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc > 2:317909/1‑148 (MQ=37) gAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc > 8:67869/1‑135 (MQ=35) gAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑c > 6:124293/1‑149 (MQ=37) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGa > 4:113163/1‑149 (MQ=37) ccGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAACCCGGCTCAGACC‑A‑CGAt > 7:20752/1‑148 (MQ=37) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCa < 2:93336/149‑1 (MQ=37) ggCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCaa > 4:245600/1‑149 (MQ=37) ggCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCaa > 8:150844/1‑149 (MQ=37) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTAACCATCGAGAACGCCACAGGAGGTAATTTCGAGAAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTc > 2:327222/1‑149 (MQ=255) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCgg > 5:310943/1‑149 (MQ=21) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCgg > 5:263989/1‑149 (MQ=34) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAACGTCAGCGTCACCATCGAGAACGCAACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCgg > 2:179281/1‑149 (MQ=21) atggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTc < 7:235525/147‑1 (MQ=21) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTc < 4:85153/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTc < 4:80566/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTc > 5:85833/1‑149 (MQ=34) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ac < 4:142216/149‑2 (MQ=18) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑At < 4:247541/149‑1 (MQ=35) gTCGATTTCCAGACCCCGGCGAATGACGTCTCCAACAACGGTTCGACCGTCAGCGTCACCATCGAGACCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGccac < 8:291324/149‑1 (MQ=255) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCaa < 3:259181/131‑1 (MQ=34) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGccac > 3:149873/1‑149 (MQ=39) tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc > 6:215046/1‑111 (MQ=35) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGa > 8:81889/1‑149 (MQ=21) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGa > 1:77492/1‑149 (MQ=39) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGAc > 3:127051/1‑149 (MQ=21) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATACCACCACCGCGa < 3:246121/148‑1 (MQ=21) aCCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCCCCGCGACCCt > 2:163081/1‑149 (MQ=255) ccccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTAAGACC‑A‑CGATCAACGAATCGGTCG‑ATGCCACCACAGCGAcc > 8:210020/1‑146 (MQ=255) cccGGCGAATGACGTCTACAACATCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGa > 7:248295/1‑149 (MQ=255) cccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATAGAGAACGACACAGGCGGTAATTTCGAGCAACTTACCCAGAATCCGACCACGGCTAAGACA‑A‑CGATCAACGACTCGGTCG‑AGTCCACCAACGCGACCCTGa > 4:218985/1‑149 (MQ=11) ccGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGAc > 5:293949/1‑149 (MQ=21) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACg < 2:211639/149‑1 (MQ=39) ggCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACgg > 8:133783/1‑149 (MQ=39) gCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGc < 4:149873/149‑1 (MQ=39) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGccc < 3:142531/148‑1 (MQ=37) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCg < 5:186348/142‑1 (MQ=37) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCg > 6:186348/1‑142 (MQ=37) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGt < 2:77492/149‑1 (MQ=37) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGt > 1:16289/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 8:241292/1‑145 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 7:52312/1‑149 (MQ=37) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 4:125076/1‑149 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 5:221349/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 7:290786/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 3:305354/1‑148 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg > 4:134004/1‑149 (MQ=37) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAg < 1:186540/129‑1 (MQ=38) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAg > 2:186540/1‑129 (MQ=38) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 6:310943/149‑1 (MQ=37) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 2:151996/1‑149 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCGACCGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 1:102143/148‑1 (MQ=255) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 1:17890/1‑148 (MQ=37) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGc > 6:84055/1‑120 (MQ=39) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa < 7:90123/149‑1 (MQ=38) cGTCAACGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa < 3:98680/149‑1 (MQ=38) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGCCC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGCCCCTGACGGCGAGCCCGTCGGTCCCCGAAGGCGGCGTAAtg > 4:282675/1‑148 (MQ=255) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCGCATGCCACCACCGCGACCCTGACGGCGAGc < 1:198843/123‑1 (MQ=255) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTa < 6:221349/149‑1 (MQ=37) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTa > 6:252858/1‑149 (MQ=37) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTaca > 2:164465/1‑149 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg > 3:13529/1‑132 (MQ=34) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAcc < 1:317909/149‑1 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg < 7:32718/132‑1 (MQ=34) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg > 8:32718/1‑132 (MQ=34) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 4:329755/1‑149 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 1:146934/1‑149 (MQ=37) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt > 8:252016/1‑149 (MQ=37) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt < 7:7269/149‑1 (MQ=37) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt < 1:41393/149‑1 (MQ=37) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt < 5:252858/149‑1 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc > 6:164985/1‑149 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 3:113163/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 5:133345/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 1:334380/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 5:217414/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 4:143291/149‑1 (MQ=37) aGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc > 8:273043/1‑126 (MQ=35) aGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc < 7:273043/126‑1 (MQ=35) cGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTg > 5:67243/1‑149 (MQ=34) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGc > 3:23902/1‑149 (MQ=34) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCAGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGc > 5:154486/1‑149 (MQ=21) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt < 6:5265/130‑1 (MQ=35) aTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTTGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCa < 3:81530/148‑1 (MQ=21) ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGAc > 1:132375/1‑149 (MQ=34) aCTGACCCCGAACCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGtga < 1:164088/149‑3 (MQ=14) tGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGtga > 3:318518/1‑145 (MQ=17) cGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc < 8:123528/143‑1 (MQ=38) cGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc > 7:123528/1‑143 (MQ=38) tCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACACTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGt > 5:347547/1‑149 (MQ=38) | CGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACC‑A‑CGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGT > NC_002947/196942‑197237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |