| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,179 | A→G | 6.5% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,179 | 0 | A | G | 6.5% | 486.0 / 16.8 | 168 | V895V (GTA→GTG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (78/79); new base G (4/7); total (82/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01 | |||||||||||
Only 100 of 170 total aligned reads displayed.
CGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGT > NC_002947/197032‑197326 | cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa < 7:90123/149‑1 (MQ=38)cGTCAACGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa < 3:98680/149‑1 (MQ=38) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GCCCCCGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑c > 4:287401/1‑149 (MQ=255) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑c < 6:300785/149‑1 (MQ=39) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CAcc > 5:38991/1‑149 (MQ=38) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CAcc > 3:123286/1‑149 (MQ=38) cGTCACCATCGAGAACGCCACAGGCGTTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CAcc > 1:8682/1‑148 (MQ=38) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CAcc > 2:41393/1‑148 (MQ=38) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTa < 8:290786/149‑1 (MQ=17) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTa < 6:221349/149‑1 (MQ=37) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTa > 6:252858/1‑149 (MQ=37) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTaca > 2:164465/1‑149 (MQ=37) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CAc > 1:16351/1‑143 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACAcc < 1:317909/149‑1 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCg > 4:329755/1‑149 (MQ=37) aTCGAGAACGCCACAGGCGTTAATTTCGAGCAACTTACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGt < 7:210020/149‑1 (MQ=255) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGt < 1:151996/149‑1 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGt < 5:252858/149‑1 (MQ=37) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GCCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTg > 3:85150/1‑149 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGa < 2:25689/148‑1 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGa < 4:127051/148‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGAcc > 6:152382/1‑149 (MQ=17) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGAcc > 1:37006/1‑149 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGAcc < 2:37006/149‑1 (MQ=37) gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGAccc < 5:71150/149‑1 (MQ=17) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCt < 6:143802/148‑1 (MQ=37) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTg < 2:17890/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGa < 1:334380/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGa < 5:133345/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGa < 4:305354/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGa < 4:143291/149‑1 (MQ=37) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAT‑CACTTACACCGTGACCCTGAGc > 1:96967/1‑148 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCA‑GACCACGATCATCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGc > 7:61907/1‑148 (MQ=255) aGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CAc < 7:273043/126‑1 (MQ=35) aGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATc < 7:207282/149‑1 (MQ=35) aGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATc < 4:317126/149‑1 (MQ=25) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCAGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGc > 5:154486/1‑149 (MQ=21) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGt < 6:5265/130‑1 (MQ=35) tAATTTCTATCAACTTCCCCAGAAAGCTACCCCGGCTCA‑GACAACGATCAACGACTCGGTCTATGCCACCACAGCGAACCTGACGGCGAGCCCGTCTGTCACCTAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGc < 8:219752/147‑1 (MQ=11) aTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTTGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCa < 3:81530/148‑1 (MQ=21) tttCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGa < 1:136031/149‑1 (MQ=34) ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGAc > 1:132375/1‑149 (MQ=34) aaCTGACCCCGAATCCGACCCCGGCTCAGGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg > 1:198185/1‑148 (MQ=21) aaCTGACCCCGAACCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCa > 4:142350/1‑139 (MQ=18) aaCTGACCCCGAACCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCa < 3:142350/139‑1 (MQ=18) aCTGACCCCGAACCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGtga < 1:164088/149‑3 (MQ=14) aCTGACCCCGAACCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGtga > 3:155668/1‑147 (MQ=14) cTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGt > 1:18237/1‑116 (MQ=35) cTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGt < 2:18237/116‑1 (MQ=35) tGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGtga > 3:318518/1‑145 (MQ=17) cGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc > 7:123528/1‑143 (MQ=38) cGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAAcc < 8:123528/143‑1 (MQ=38) cGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 3:242604/147‑1 (MQ=39) cGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa > 4:242604/1‑147 (MQ=39) tCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACACTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGt > 5:347547/1‑149 (MQ=38) ccGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATc < 2:262061/118‑1 (MQ=35) gACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTcc > 4:144408/1‑148 (MQ=37) aCCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACCCCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCaa > 1:328364/1‑149 (MQ=37) cccGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACg < 5:164985/149‑1 (MQ=35) ccGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACgg > 1:230284/1‑149 (MQ=34) gCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCa < 2:210688/149‑1 (MQ=34) tCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAgg < 4:8357/149‑1 (MQ=35) a‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGt < 2:151582/148‑1 (MQ=37) a‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGt > 6:162944/1‑148 (MQ=37) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCCTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCACGtca > 8:142317/1‑148 (MQ=25) ccACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatc < 2:8682/149‑1 (MQ=40) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTCACCCTGTCCAACGGCCAGGtcatca > 7:163176/1‑149 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt > 3:27556/1‑149 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt > 6:165136/1‑149 (MQ=255) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGtt < 2:54915/149‑1 (MQ=255) gACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGc < 5:124293/149‑1 (MQ=255) cTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCTAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGcc < 7:47382/148‑1 (MQ=255) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCa < 5:165136/149‑1 (MQ=255) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGaa > 6:18455/1‑141 (MQ=255) tCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCaa > 3:36486/1‑148 (MQ=255) gCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAAcc > 4:61972/1‑147 (MQ=255) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg > 3:194174/1‑149 (MQ=255) ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg > 1:19128/1‑148 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGTCGGAGTAAT‑CACCTACACCGTGACCCTTAGCAATCCTGCCCAGACGCCTGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCa < 3:218985/149‑1 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg > 5:63518/1‑147 (MQ=255) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCa > 8:266180/1‑149 (MQ=255) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGc > 8:248678/1‑149 (MQ=255) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 3:271654/1‑86 (MQ=33) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGc > 5:210516/1‑68 (MQ=35) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 5:205882/1‑149 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 4:25349/1‑147 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACACTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 6:347547/149‑1 (MQ=255) ccGTCGGTCACCGAAGGCGGCGTAATCCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCgg > 1:2998/1‑149 (MQ=255) aagTCGGTCACCGAAGGCGGCGTAAA‑CACCTACACCGTGACCCTGAGCAAACCTGCCCAGACGCCGGTAACCGTTACCCTCTCCAACGGCCAGGTAATCACTGTTGAACCCGGAAAAACCCAGGGCAGAGTCGATTTCCAGACCCCGGc > 4:46000/3‑149 (MQ=14) ggTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATg < 3:61972/149‑1 (MQ=255) gTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCg > 1:27206/1‑127 (MQ=255) gTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCg < 2:27206/127‑1 (MQ=255) gTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGa > 1:4365/1‑149 (MQ=255) tCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 4:194174/149‑1 (MQ=40) aCCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGt > 7:78410/1‑149 (MQ=39) aCCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGt < 3:65942/149‑1 (MQ=39) ccGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTc < 4:27556/149‑1 (MQ=39) cGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTc > 5:200257/1‑148 (MQ=39) cGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCt < 7:248678/149‑1 (MQ=39) tAAT‑CACCTACACCGTGACCCTGAGCAATCCTGGCCAGACGCCGGTAACGGTGACCCTGTCCAACGGCCTGGTCATCACTGTTGAAGCGGGCAAAACGCAGGGCAGCGTCGAGTTCCAGACCCCGGCCAATGACGTCTACAACAACGGt < 6:93841/149‑1 (MQ=11) | CGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCA‑GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT‑CACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGT > NC_002947/197032‑197326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |