Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,063,192 | C→A | 16.7% | intergenic (+49/‑158) | PP_1838 → / → PP_1839 | membrane protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,063,192 | 0 | C | A | 16.7% | 78.2 / 8.4 | 35 | intergenic (+49/‑158) | PP_1838/PP_1839 | membrane protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (10/19); new base A (3/3); total (13/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.48e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.29e-01 |
GGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGG > NC_002947/2063050‑2063340 | ggAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACAATCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGc < 1:102675/149‑1 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTTCCCGCT‑CCCACAGGCATTGCACAGGGt > 4:4991/1‑147 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGc > 4:323958/1‑135 (MQ=255) gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGAc > 8:315773/1‑149 (MQ=255) gCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CGCACAGGACCTGCACAAGGTCCGAAccct < 8:248108/149‑3 (MQ=37) cTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTACCCACAGGCATTGCACAGGGTTCGGACCtt < 1:31365/149‑1 (MQ=255) cTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTtg < 3:172047/149‑1 (MQ=255) gAAGCTTATATCCAGCCCGCCACCAAGAGCCTGCTGGATAACACCGCCGTCGTGTTGCACGGCAC‑ACCGAAGTAAACCGGGGACGCTTTGCGGCCCATTCGCTGTCTTGCCCGCT‑ACCACATGCATTTCACAGTGTTCGTACCTtttg < 4:44669/148‑1 (MQ=255) gAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGTGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGc < 3:173503/149‑1 (MQ=255) gCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAAGGTCCGAACCCTGTGCaat < 2:303238/149‑3 (MQ=255) cAGACCGAGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGc < 5:192137/148‑1 (MQ=255) aGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACGGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGa < 2:328573/149‑1 (MQ=21) aGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGa < 1:309951/149‑1 (MQ=21) gACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTTGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTTCAGGTCCTGTGCGAg < 6:140582/149‑1 (MQ=255) cgcgACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg < 6:54799/149‑1 (MQ=255) gcgACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGtt < 3:25200/119‑1 (MQ=255) gcgACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGtt > 4:25200/1‑119 (MQ=255) gcgACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCggg < 3:137011/149‑1 (MQ=255) ccAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCggg > 3:265745/1‑145 (MQ=255) ccAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCggg < 4:265745/145‑1 (MQ=255) ccAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAg < 7:315773/149‑1 (MQ=255) agCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCcgc < 3:4991/149‑1 (MQ=255) ctgctgGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGaa < 4:230671/149‑1 (MQ=255) cGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACCGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAAc < 5:304092/132‑1 (MQ=255) ccATTCGCGGGCTTGCCCGCT‑CGCACAGGACCTGCACCAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCACGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCAt > 7:249916/1‑149 (MQ=14) ttCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATca > 1:12685/1‑148 (MQ=255) cgcgGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATcaca < 2:12685/148‑1 (MQ=255) ccGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTc > 3:203771/1‑149 (MQ=255) cGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGTTGTTCg > 6:275843/1‑149 (MQ=255) gCT‑CGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGt > 2:331572/1‑149 (MQ=18) cT‑CGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt > 4:216163/1‑149 (MQ=18) ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTgg < 7:13485/138‑1 (MQ=255) ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTgg > 8:13485/1‑138 (MQ=255) cacaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGgt > 2:32916/1‑138 (MQ=255) cacaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGgt < 1:32916/138‑1 (MQ=255) cacaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACt > 1:310981/1‑149 (MQ=255) cATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAgg > 1:179097/1‑149 (MQ=255) | GGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCAC‑ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCT‑CCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGG > NC_002947/2063050‑2063340 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |