| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,551 | C→G | 6.7% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,551 | 0 | C | G | 6.7% | 304.9 / 8.1 | 106 | T1019T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (54/43); new base G (2/5); total (57/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 107 total aligned reads displayed.
GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGG > NC_002947/197404‑197699 | gACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCATGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCa > 6:298649/1‑149 (MQ=37) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCAt > 7:312271/1‑149 (MQ=37) ccACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGTCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCAtt < 7:278199/149‑1 (MQ=37) ccACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGA‑CCCTGTCCAACGGCCAAACCAt > 8:293100/1‑148 (MQ=21) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTa > 1:66543/1‑149 (MQ=37) aTCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGt < 2:66543/149‑1 (MQ=37) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCACTCCTTCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACTGCCAAACCATTACCGtt < 6:289320/149‑1 (MQ=255) cGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCCTGTCCAACGGCCAAACCATTACCGTTGa‑a < 1:203152/149‑1 (MQ=255) cTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGCCCAAACCATAACCCATGA‑AGCCg > 8:270043/1‑149 (MQ=255) tCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCa < 2:281613/133‑1 (MQ=37) tCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCa > 1:281613/1‑133 (MQ=37) tCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCgg > 1:300175/1‑149 (MQ=37) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCa < 5:107925/130‑1 (MQ=38) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCa > 6:107925/1‑130 (MQ=38) gATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATGACCCTACCCCGTGATCGTGAGCAATCATGCCCAGACGCCGGTACCCGTGC‑CCCTGTCCAACGGCCAACCCATTACCGTTGA‑GGCCGGCAAGa > 1:92993/1‑149 (MQ=11) caccacCGCGACCCTGACGGCGGAAACGTCGGACACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCAAGACGCCGGTAACCGTGA‑CCCAGACCAACGGCCAAACAAATACCGTAGA‑AGCCGCCAAAACCCAgg > 7:51326/1‑149 (MQ=11) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAgg < 1:43346/149‑1 (MQ=37) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAgg > 6:93250/1‑149 (MQ=37) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAgg > 7:78617/1‑149 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAggg > 1:163981/1‑149 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAggg < 8:312271/149‑1 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAggg > 5:19314/1‑149 (MQ=37) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCa < 1:22668/149‑1 (MQ=37) cgcgACCCTGACGGCGCGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCg > 5:67015/1‑149 (MQ=37) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑GCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCg > 1:277864/1‑149 (MQ=37) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGAt < 5:93250/149‑1 (MQ=37) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGAt < 2:193742/149‑1 (MQ=37) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGAtt > 1:157395/1‑149 (MQ=37) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGAtt > 1:152276/1‑149 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 7:293100/148‑1 (MQ=21) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 4:82247/148‑1 (MQ=37) gAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGAccc > 1:137927/1‑149 (MQ=37) ccGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGAt < 7:142128/135‑1 (MQ=37) ccGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGAt > 8:142128/1‑135 (MQ=37) ggTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt > 8:300789/1‑148 (MQ=37) tCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GAc < 2:300175/149‑1 (MQ=37) tCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GAc < 5:298649/149‑1 (MQ=37) cGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTc > 5:180369/1‑148 (MQ=37) cGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTc > 3:63666/1‑148 (MQ=37) cGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CACTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCAAGGGCAGCGACGATTTCCAGACCCCGGCGAAA‑‑GACGTc > 2:219168/1‑148 (MQ=255) aaGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTa > 1:159055/1‑148 (MQ=37) cgTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACg < 2:159055/149‑1 (MQ=37) gATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGtt > 2:174044/1‑149 (MQ=37) atga‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAAACATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGtt < 1:219168/145‑1 (MQ=255) a‑CCTACCCCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGa < 2:157395/148‑1 (MQ=37) a‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGa < 6:19314/148‑1 (MQ=37) a‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGa < 1:174044/148‑1 (MQ=37) a‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGa < 2:152276/148‑1 (MQ=37) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGAccg > 2:12162/1‑147 (MQ=25) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTg > 5:55619/1‑149 (MQ=38) acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGAtt < 1:211760/105‑1 (MQ=40) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCg > 1:69086/1‑149 (MQ=39) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCg > 5:187322/1‑149 (MQ=21) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTc < 3:78933/149‑1 (MQ=21) aTCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCa < 3:159506/148‑1 (MQ=18) ccTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCa > 8:69459/1‑149 (MQ=37) cTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCa > 6:339914/1‑148 (MQ=17) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc < 2:69086/149‑1 (MQ=37) tGAGCAATCCTGCCCAGACGCCGGAAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc > 5:231775/1‑149 (MQ=37) aGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTTTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCga < 6:315254/149‑1 (MQ=17) aGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCTATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc < 4:142246/147‑1 (MQ=37) aGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGTCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc > 8:68717/1‑147 (MQ=37) aGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCga < 3:237283/149‑1 (MQ=17) aGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCAAGGCCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCCTCAGCGTCACCATc > 1:128849/1‑147 (MQ=255) cAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑g < 2:29042/107‑1 (MQ=35) cAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCgag > 3:301354/1‑148 (MQ=37) tCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAAc < 3:68781/148‑1 (MQ=37) tCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAAc > 4:68781/1‑148 (MQ=37) tGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCca > 2:307518/1‑149 (MQ=37) ccAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGc > 1:7384/1‑54 (MQ=35) ccAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCAATACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAg > 5:99165/1‑149 (MQ=17) aGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGc < 6:115947/149‑1 (MQ=17) aGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGc < 7:270043/149‑1 (MQ=17) aCGCCGGTGACCGTGA‑CCCTGTCCAACGGCCAAACGATTACCGTTGA‑AGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCgg > 8:103008/1‑149 (MQ=255) aCGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg > 2:320380/1‑149 (MQ=17) cGCCGGTGACCGTGA‑CCCTGTCCAACGGCCAAACGATTACCGTTGA‑AGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGt < 7:103008/149‑1 (MQ=255) gCCGTTGACCGTGA‑CCCTGTCCAACGTCCAAACGATTACCGTTTA‑AGCCGGCTAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAT‑‑GACGTCTAGAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTa < 5:13716/149‑1 (MQ=11) gTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt < 6:187322/149‑1 (MQ=17) tgaCCGTGA‑CCCTGTCCAACGGCCAAACGATTACCGTTGA‑AGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 4:207648/147‑1 (MQ=255) aCCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 6:67015/149‑1 (MQ=34) aCCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 2:277864/149‑1 (MQ=34) aCCGTGA‑CCCTGACCAACGGCCAAACGATTACCGTTGA‑AGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 7:199823/149‑1 (MQ=255) ccGTGA‑CCCTGTCCAACGGCCAAACGATTACCGTTGA‑AGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 4:127656/149‑1 (MQ=16) cGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 4:313807/1‑148 (MQ=32) cGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 1:227537/1‑148 (MQ=32) cGTGA‑CCCTCTCCAACGGCCAAACTCTTAGCGTTGA‑AGCCGCCAAAACACAGGGCAGCGTCGACTTCCAGACCCCGGCGAATTCCTCGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:272302/149‑1 (MQ=11) gTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGAGAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 1:50557/1‑148 (MQ=17) ccTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGCCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 2:211919/1‑149 (MQ=17) ccTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTg > 4:48493/1‑148 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 3:63171/1‑149 (MQ=32) ccTGTCAAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 1:87079/1‑149 (MQ=17) cTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCgaga < 4:195566/118‑1 (MQ=32) cTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCgaga > 3:195566/1‑118 (MQ=32) cAACGGCCAAACGATTACCGTTGA‑AGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 3:138846/1‑148 (MQ=12) aaCGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCTAGCAACTGACCCCGaa < 6:55619/149‑1 (MQ=17) aaCGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa > 8:227749/1‑149 (MQ=32) cGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAcc < 7:69459/149‑1 (MQ=33) aaaCCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACg > 7:198715/1‑149 (MQ=35) aCCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGcc < 2:50557/149‑1 (MQ=37) cATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCgg < 7:68717/149‑1 (MQ=37) | GACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCA‑CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGA‑CCCTGTCCAACGGCCAAACCATTACCGTTGA‑AGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAT‑‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGG > NC_002947/197404‑197699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |