Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,336,497 | C→T | 7.4% | intergenic (‑41/+39) | PP_2052 ← / ← PP_5500 | bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,336,497 | 0 | C | T | 7.4% | 159.3 / 2.1 | 56 | intergenic (‑41/+39) | PP_2052/PP_5500 | bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (25/26); new base T (2/2); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.82e-01 |
AGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGC > NC_002947/2336350‑2336637 | agagAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGc > 8:108345/1‑148 (MQ=255) agaAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAAc < 7:164963/149‑1 (MQ=255) gaAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACa < 4:42137/149‑1 (MQ=255) aGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAgg < 1:163822/149‑1 (MQ=255) gcttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCga < 1:341023/147‑1 (MQ=255) cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGTTGCAGGCgagat < 6:331161/149‑2 (MQ=255) cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGaa > 1:175908/1‑149 (MQ=255) ttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAAc > 3:287227/1‑149 (MQ=255) gAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACgg > 6:281400/1‑149 (MQ=255) gtgtCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGgt < 7:108345/148‑1 (MQ=255) gtgtCCTGAAGCGCACGCGCTCGGTGTCGAAGAGTGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACAGTGAAAGAAAAGCATTGGCTTTTGCCCCTTGTCGTTTCGTCA‑GGCATCTCGCCTGCAACATGCGAGAACGgtg > 2:260299/1‑149 (MQ=255) cTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGa < 1:178181/149‑1 (MQ=255) tGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAg > 3:56070/1‑149 (MQ=255) aaGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAg < 4:287227/147‑1 (MQ=255) cgcAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGTTGCAGGCgagatgc > 1:285900/1‑132 (MQ=255) cgcAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGTTGCAGGCgagatgc < 2:285900/135‑4 (MQ=255) gcgcTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTggg < 6:156184/149‑1 (MQ=255) gcgcTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTggg < 5:321967/149‑1 (MQ=255) gcgcTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGGCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTggg < 8:87689/149‑1 (MQ=255) gtgtCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTc < 5:281400/149‑1 (MQ=255) gAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTc > 7:206530/1‑149 (MQ=255) agGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCgggg < 8:206530/149‑1 (MQ=255) tGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATCGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGGAGTGGGGGCAGTCAGGGGGGGGGcg > 4:287915/1‑147 (MQ=255) atccatATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGACAACCGTGTGTGAGATGCAGTGGGCGCAGTCAGGTCGGGGGCACACGt > 1:311364/1‑149 (MQ=255) tccatATCGAAGATGGCGCTGAAAATCTGTATACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGtt > 1:28274/1‑149 (MQ=255) catATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTc > 7:56243/1‑148 (MQ=255) catATCGAAGATGGCGCGGAAAATCTGATTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTc < 8:218495/148‑1 (MQ=255) atatCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGa > 3:327366/1‑149 (MQ=255) tatCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGa > 1:234330/1‑148 (MQ=255) atCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGa > 5:46323/1‑147 (MQ=255) tCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAg < 7:227882/149‑1 (MQ=255) gAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCTTGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAgg < 1:260299/148‑1 (MQ=255) gAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCgggg < 7:7501/132‑1 (MQ=255) gAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCgggg > 8:7501/1‑132 (MQ=255) gAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAggg < 2:28274/149‑1 (MQ=255) gAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAggg < 8:56243/149‑1 (MQ=255) gAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAggg > 7:288354/1‑149 (MQ=255) gAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAggg < 3:258430/149‑1 (MQ=255) gAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAgg < 2:107336/148‑1 (MQ=255) cTGAACATCTGTTGACCGTGAAAGAAAAGCATTCGCTGCTGCCCCTTGGCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTCCAGTGGGGGCAGTCAGGCCGGGGGCACACGTTCGACAGGGGGACGCTCAg < 2:263473/149‑1 (MQ=255) tttACCGTGCACGAAAAGCATTGCCCGTTGCCGCTTGGCGTTGCGTCC‑GTCATCTCGCCTGCAACCGGCGAGAACGGTGTGTGCGCTGCAGTGGCGCCAGTCAGGTCGGGGGCCCACGTTCGACAGGGGGACGCTCAGGAGTGACGCag < 6:317456/149‑1 (MQ=255) gttACCGTGAAACCCCAGCCGTGCCTGTTGCCCCTTGGCGGTGCGCCC‑GGCAGCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCGGCCGGGGGGGCAGTCCGGGCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCag < 2:29942/148‑1 (MQ=255) cGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGt > 1:277725/1‑148 (MQ=255) gaaagaaaAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGCGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAgg > 7:8792/1‑149 (MQ=255) aagaaaAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAggcg > 6:70446/1‑149 (MQ=255) agaaaAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGa < 2:264068/112‑1 (MQ=255) agaaaAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGa > 1:264068/1‑112 (MQ=255) aaaaGCATTGGCTGTTGCCCGTTGTCGTTGCGTCA‑GGCATCTCGCCTGGAGCAGGGGAGAAGGGTGTGTGTGCTGCAGTGGGGGCTGGCAGGTCGGGGGGACAGGTTGGGGAGGGGGAGGGTCTGGAGGGGGGGAGTGGTAGggcgggg > 6:73274/1‑149 (MQ=255) aaGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAggcggggcg > 6:132275/1‑149 (MQ=255) gCTGTTGCCCCTTGTCGTTGCGTCAGGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCggg > 1:177741/1‑149 (MQ=255) cTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGGAAGGCGGGGCGGAGCGGGGCGTGCagag > 3:78748/1‑148 (MQ=255) gTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGaggagg > 5:230989/1‑149 (MQ=255) cgttctcGCCTGTTGCAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCACCCGTTg > 3:288304/4‑149 (MQ=255) ctcGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAggg > 1:316736/1‑75 (MQ=255) ctcGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAggg < 2:316736/75‑1 (MQ=255) tcGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCTACCGTTgcggc > 8:221613/1‑148 (MQ=255) gCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGCGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTgcgt < 8:8792/145‑2 (MQ=255) | AGAGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGTCGTTGCGTCA‑GGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGC > NC_002947/2336350‑2336637 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |