Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,369,768 | G→C | 10.0% | L862L (CTG→CTC) ‡ | gdhB → | NAD‑specific glutamate dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,369,768 | 0 | G | C | 10.0% | 147.6 / 6.7 | 50 | L862L (CTG→CTC) ‡ | gdhB | NAD‑specific glutamate dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (20/25); new base C (2/3); total (22/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.69e-01 |
CCGTGGTGGCCTGCGCTGGTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGCCAACGTGGTGCGTCATGACGATGACGAC > NC_002947/2369627‑2369909 | ccGTGGTGGCCTGCGCTGGTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCa < 4:224088/149‑1 (MQ=255) tggtggCCTGCGCTGGTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCCCAGCGGCAggc < 1:332729/149‑3 (MQ=255) tggtggCCTGCGCTGGTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCCCAGCGGCAggc < 7:141722/149‑3 (MQ=255) gtggCCTGCGCTGGTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCCCAGCGGCAGGCga < 6:100501/149‑2 (MQ=255) tggCCTGCGCTGGTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTg < 5:64345/149‑1 (MQ=255) gCCTGCGCTGGTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGAc < 4:285238/149‑1 (MQ=255) tcttcgcggTCGGACCAGCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGAc > 4:112355/8‑148 (MQ=255) cgcTGGTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACgag < 8:230806/147‑1 (MQ=255) gcTGGTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATc < 8:78455/149‑1 (MQ=255) gTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATcgccg > 3:277878/1‑149 (MQ=255) cGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCgccgcc > 5:107401/1‑148 (MQ=255) aCC‑GCGAAGAGGACTTGCGTAGCGTAGTGCTGTGGCTGGTGAAAGCCCAGCATGTGAAGAACTCGGTCAGGGTGACGGTCGTCTCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTTAGGTGATCGACGCCGaa < 6:188841/149‑1 (MQ=255) aCC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGccgccg > 3:121610/1‑147 (MQ=255) aCC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGccgccg > 3:211097/1‑147 (MQ=255) gcgAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAggc < 1:118794/149‑1 (MQ=255) ttCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTa > 8:281713/1‑149 (MQ=255) ttCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGAGAAGAACTCGGTCATCGTGCCGGTCGGCGCCATGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTa > 6:334650/1‑149 (MQ=255) cGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCg > 6:112544/1‑149 (MQ=255) ccGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATc < 5:112544/149‑1 (MQ=255) aaGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAg > 8:309150/1‑126 (MQ=255) aaGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAg < 7:309150/126‑1 (MQ=255) cTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCt < 4:211097/149‑1 (MQ=255) cTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCt < 4:121610/149‑1 (MQ=255) gTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGc < 8:26015/148‑1 (MQ=255) tGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTc < 7:162876/149‑1 (MQ=255) agcagGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCAcc > 6:214235/1‑149 (MQ=255) gTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTc > 3:275455/1‑125 (MQ=255) gTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTc < 4:275455/125‑1 (MQ=255) gTGAAGAACTCGGTCATCGTGCCGGCCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACaa > 6:34981/1‑149 (MQ=255) tGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAAc < 3:112355/149‑1 (MQ=255) gaagaaCTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAAcc > 3:91303/1‑149 (MQ=255) gaaCTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCTCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCa < 6:107401/149‑1 (MQ=255) cTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTACCGCGTCGCCTGCCGCTGGGCGGCCGCCCTGACGAGATAGCCCCCCAAGGC‑‑‑‑GTGGCGTGCTAACCCCAATTCATTTACGGCCAGCGCGACAAAACCCACAAccaaaag > 2:172877/1‑143 (MQ=255) ggTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACg > 3:161837/1‑149 (MQ=255) ggTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTACCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACg < 1:172877/149‑1 (MQ=255) tCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGt < 7:281713/149‑1 (MQ=255) cGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCg > 5:127251/1‑149 (MQ=255) tGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCgtg > 7:114418/1‑149 (MQ=255) ggTCGGCGCCAAGGGGGGTTTTCTGCCGCGGCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGCCCCCTGTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCgtg < 1:275983/149‑1 (MQ=255) gcCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGc > 6:139740/1‑149 (MQ=255) ccAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGcc < 4:91303/149‑1 (MQ=255) cAAGGGTGGTTTCCTGCCGCGTCGCCTGGCGCAGGGCGGCAGCCGAGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGGGTGCTTCCGGATCGTCAATTACGGCCTGCAGGACCAAACCCCCAAACTCAACGACGGTGGGCTGGGGACGCCgggc > 6:196031/1‑146 (MQ=255) tgggTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCGGTGAGGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCAGCTAGAACGTCTAGGACGGTGGCGTGGTTCGGCCGGCCaat < 6:127251/148‑2 (MQ=255) ccGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGCCAACGTGGTGCGTCatg < 5:334650/148‑1 (MQ=255) cacggcTGCCGCCCAGCGGCAGGCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGCCAACGTGGTGCGTCatgacgat > 4:283502/6‑149 (MQ=255) acggcTGCCGCCCAGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGCCAACGTGGTGCGTCatgacgat > 1:63076/5‑148 (MQ=255) gCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGCCAACGTGGTGCGTCatgacgatgac > 7:245013/1‑149 (MQ=255) gCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGCCAACGTGGTGCGTCatgacgatgac < 4:277878/149‑1 (MQ=255) ccTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGCCAACGTGGTGCGTCatgacgatgacg < 4:161837/149‑1 (MQ=255) ccGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGCCAACGTGGTGCGTCATGACGATgacgac < 8:245013/147‑1 (MQ=255) | CCGTGGTGGCCTGCGCTGGTCCGACC‑GCGAAGAGGACTTCCGTACCGAAGTGCTGGGGCTGGTGAAAGCCCAGCAGGTGAAGAACTCGGTCATCGTGCCGGTCGGCGCCAAGGGTGGTTTCCTGCCGCGTCGCCTGCCGCTGGGCGGCAGCCGTGACGAGATCGCCGCCGAAGGC‑‑‑‑GTGGCGTGCTACCGCATCTTCATTTCCGGCCTGCTCGACATCACCGACAACCTCAAGGACGGTGGCGTGGTGCCGCCGGCCAACGTGGTGCGTCATGACGATGACGAC > NC_002947/2369627‑2369909 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |