| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,951,342 | G→T | 13.5% | intergenic (‑121/+40) | oguA ← / ← PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,951,342 | 0 | G | T | 13.5% | 143.6 / 12.6 | 52 | intergenic (‑121/+40) | oguA/PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (22/22); new base T (2/5); total (25/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.05e-01 | |||||||||||
TTTGCAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAGTTCTGGAAGCA > NC_002947/2951199‑2951489 | tttGCAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGcc < 6:71513/148‑1 (MQ=255) tGCAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCCAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCcgc < 5:334615/148‑1 (MQ=255) gCAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTCTAGCcgcc < 2:84088/148‑2 (MQ=255) gCAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTCTAGCcgcc < 2:17189/148‑2 (MQ=255) cAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGaa < 5:173925/149‑1 (MQ=255) aGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGATCcgcg > 5:273564/1‑146 (MQ=255) gggTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAaga < 6:190330/149‑1 (MQ=255) gttttGTAGATGACATGGTGCAACCATGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTACGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAagag < 5:344480/147‑1 (MQ=255) ggTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAagag < 4:163773/149‑1 (MQ=255) gTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTACCCGTGCCGGCCTCTTCGC‑GGCTCTAGCCGCCAagag < 2:152661/148‑1 (MQ=39) tttGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTCGC‑GGCTCTAGCCGCCAAGAGGc < 5:153206/149‑1 (MQ=255) gTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCgg > 4:293998/1‑149 (MQ=255) tGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACgg < 4:212984/149‑1 (MQ=255) aCATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACggg < 7:189271/148‑1 (MQ=255) aaGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCAt < 5:236742/149‑1 (MQ=255) gCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATg > 3:13193/1‑148 (MQ=255) cTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGaaa < 3:293998/149‑1 (MQ=255) tACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCacac < 6:273564/149‑1 (MQ=255) gATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGc > 3:242522/1‑141 (MQ=255) gATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGc < 4:242522/141‑1 (MQ=255) aTAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCgg < 4:263304/135‑1 (MQ=255) aTAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCgg > 3:263304/1‑135 (MQ=255) aTAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCAACCGCCGCGAATAGGCCGGCACGGGTTGCAGCCATTCAAGAACACACCCCCACGCGGCTGCTAACAcccac > 6:39139/1‑147 (MQ=255) gTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCggg < 7:286919/149‑1 (MQ=255) tAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATcc > 5:78988/1‑149 (MQ=255) tAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATcc > 2:61370/1‑149 (MQ=255) agcaagcTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATccc < 6:78988/148‑1 (MQ=255) agcTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCg > 6:159856/1‑149 (MQ=255) gcTTTTTACTGATTGTATACAGCTCGAAGTGCCAGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGACGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCACCCGGACAATACCCAGcag > 6:235839/1‑147 (MQ=255) tttACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGTCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGt < 5:235839/147‑1 (MQ=255) tACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGc > 5:156163/1‑149 (MQ=255) cTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCg < 1:61370/148‑1 (MQ=255) aTTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGt‑tt < 4:13193/148‑1 (MQ=255) ttGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGt‑ttt > 4:289136/1‑148 (MQ=255) tataCAGCTCGAAGTGCCCGTGCCGGCCTCTTGGCGGGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTc > 1:222991/1‑148 (MQ=255) tataCAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGCGATAGCGT‑TTTTCaa > 7:226764/1‑149 (MQ=255) cTCGAAGGGCCCGTCCCGCCCTCGTTGC‑CGCAAGAGCAGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACAACGCCTCGCGGCTTCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGTGTTAGCGT‑TTTTCAACGCATcc < 4:214878/149‑1 (MQ=255) cccGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGt > 5:91905/1‑149 (MQ=255) cccGTGCCGGCCTCTTCGC‑GGCTCTAGCCGCCAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCACCCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGt > 1:57423/1‑149 (MQ=38) cGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGc > 3:125052/1‑149 (MQ=255) ctctTCGC‑GGCTCTAGCCGCCAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAggg > 7:153517/1‑147 (MQ=255) tctTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAg > 2:245597/1‑149 (MQ=255) tctTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAg > 3:321542/1‑149 (MQ=255) ttGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCACCAGTGCGTCAGGGTAGtt > 2:328825/1‑149 (MQ=255) gc‑ggcTCTAGCCGCCAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAGTGTAGTTCt < 8:153517/148‑1 (MQ=255) gc‑ggcTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAGTTCt < 4:15923/148‑1 (MQ=255) gc‑ggcTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAGTTCt > 3:15923/1‑148 (MQ=255) gc‑ggcTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAGTTCTg > 1:292477/1‑149 (MQ=255) gc‑ggcTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAGTTCTg > 1:231587/1‑149 (MQ=255) gcTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAGTTCTGGaa < 5:39139/149‑1 (MQ=255) cTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCaa > 2:318412/1‑112 (MQ=255) cTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCaa < 1:318412/112‑1 (MQ=255) gagCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGTCTTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAGTTCTGGAAGca < 1:245597/149‑1 (MQ=255) | TTTGCAGGGTTTGTAGATGACATGGTGCAAGCCTGCGCAATACGCATCGGCGATTACCGATGTCATAGGCGCTCGGTATTGTAAGCAAGCTTTTTACTGATTGTATACAGCTCGAAGTGCCCGTGCCGGCCTCTTGGC‑GGCTAGAGCCGCGAAGAGGCCGGCACGGGTTGCAGCCATGAAAGATCACACCGCCTCGCGGCTGCTCACACCCTCCAGCAACCGGGCAATCCCCAGCGGGTTAGCGT‑TTTTCAACGCATCCGGCAGCAGTGCGTCAGGGTAGTTCTGGAAGCA > NC_002947/2951199‑2951489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |