Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,312,690 | A→C | 6.5% | intergenic (+31/‑131) | PP_2912 → / → hemB | hypothetical protein/5‑aminolevulinate dehydratase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,312,690 | 0 | A | C | 6.5% | 158.4 / 2.3 | 59 | intergenic (+31/‑131) | PP_2912/hemB | hypothetical protein/5‑aminolevulinate dehydratase |
Reads supporting (aligned to +/- strand): ref base A (23/31); new base C (2/2); total (26/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 |
CGTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTCCAACCAA > NC_002947/3312549‑3312832 | cGTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGa < 4:148775/149‑1 (MQ=255) gTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGACCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGATTATTCCTGTACCGCCTATTCCCCGGGTTA‑ACCGCGa > 8:297867/1‑148 (MQ=255) agaTCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGTAAC‑CCCGCGAagag < 7:282315/149‑1 (MQ=255) agaTCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAagag < 1:329221/149‑1 (MQ=255) gACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCag > 3:290074/1‑148 (MQ=255) aCGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAac < 1:46662/149‑1 (MQ=255) ccgccCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAAcaca < 2:66409/149‑1 (MQ=255) cgccCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAg < 5:260668/149‑1 (MQ=255) cgccCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAg < 1:262449/149‑1 (MQ=255) ccGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGTAAC‑CCCGCGAaga > 5:249269/1‑135 (MQ=255) ccGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGTAAC‑CCCGCGAaga < 6:249269/135‑1 (MQ=255) cGGATGGACGACGCTCGTCGCCATGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGGTC‑CCCGCGAAGAGGCCAACACAGGCa > 7:123510/1‑148 (MQ=255) gacgacGCTCGTCGCCGTGCAGCACGGGCCGAGGCCGAGCATGGGCCGGCGAAGGCAGAGGAGGTAACGCCGCCCTTGATGCAGTAGTTTATTCCTGTACCGCCTCTTCGGGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACg < 7:297867/149‑1 (MQ=255) gacgacGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACg < 5:127509/149‑1 (MQ=255) cgacgCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGc > 1:52878/1‑149 (MQ=255) gacgCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGcc > 7:79114/1‑149 (MQ=255) acgCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCg < 4:284285/149‑1 (MQ=255) tcgtcgCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGc > 5:85282/1‑149 (MQ=255) tcgtcgCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGc > 8:96314/1‑149 (MQ=255) gtcgCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGcc > 8:223228/1‑148 (MQ=255) gtcgCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGc < 1:301875/147‑1 (MQ=255) ccGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGa < 3:121077/149‑1 (MQ=255) cGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGAc < 2:52878/149‑1 (MQ=255) cGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGGTTATTCCTGTACCGCCTCTTCGCGGGGGTA‑CCCGCGAAGAGGGCAACACAGGCATACCCCGGCCCTTGCAATTg > 1:333470/1‑147 (MQ=255) tGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACg > 3:71785/1‑148 (MQ=255) tGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGc < 3:145090/149‑1 (MQ=255) caCGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGac < 3:278021/149‑1 (MQ=255) gcgcCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGAcaca < 7:96314/149‑1 (MQ=255) gccgagCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCAtt > 4:151281/1‑128 (MQ=255) gccgagCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGt > 1:17186/1‑148 (MQ=255) gCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTa < 7:75656/149‑1 (MQ=255) cATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAg < 6:85282/149‑1 (MQ=255) gccAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATtctc < 4:224338/131‑1 (MQ=255) gccAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATtctc > 3:224338/1‑131 (MQ=255) ggCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGGTA‑GCCGGGAAGAGGCCAACACAGGCAAACCACGGGAGTTGGCATTGTCGGAAGGCACATGGTCGTCAGTTAGGCTTTTCAGTGgcg > 8:282604/1‑149 (MQ=255) gCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAGCACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGgcgc < 4:290074/149‑1 (MQ=255) agagGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGATGAGGCCAAAACAGGCCAAACACGGCCGTTGGCATAGACGCAAAACACCATAACCGCAATTAGGCTTTTCACTGgccccc > 2:145963/1‑145 (MQ=255) gTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTAGCCGGGTTT‑CCCCCGAAGAGGCCAACACACGCAAAACACGGCCCTTGGCATTTACGCAAGACACAATCTAGTCAATTATCCATTTCACTGGCGCGCGCCacg > 2:158569/1‑146 (MQ=255) gccgccCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTAGCCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCAATGACGCAAGACACATTCTCGTCATTTAGCCTTTTAACTGGCGCGCGCCAGGCAt > 1:255061/1‑147 (MQ=255) cccTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACTGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGtat < 4:71785/149‑1 (MQ=255) cccTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGta > 6:251436/1‑148 (MQ=255) gtagtTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGc < 8:195196/129‑1 (MQ=255) gtagtTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGc > 7:195196/1‑129 (MQ=255) tagtTTATTCCTGTACCGCCTCTTAGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGGTGCCATTGACGCAAGACACATTATCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATAAGCCGTTCaaa > 2:157388/1‑149 (MQ=255) tttATTCCTGTACCGCCTCTTCGCGGGGTTA‑ACCGCGAAGAGGCCCACACAGGCAAACCACGGCCCATGCCATAGACGCAAGACACAATCTCGTCAGTTTGACTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTc > 1:177607/1‑149 (MQ=255) tATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGt > 2:296265/1‑130 (MQ=255) tATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGt < 1:296265/130‑1 (MQ=255) ttCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTg < 5:251436/149‑1 (MQ=255) cTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATACCCTGGAg < 8:79114/149‑1 (MQ=255) cTGTACCGCCTCTTAGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTATCACTGGCGCGCGACAGGCATAAGGTATACGACGTTCAAATTACCtag > 6:183341/1‑145 (MQ=255) ttccGCCTCTTCGCGGGTGTA‑CCAGAGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTAAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGTAGCt < 8:146791/146‑1 (MQ=255) ccGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTc < 1:158569/149‑1 (MQ=255) gCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCAGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCAt < 7:282604/149‑1 (MQ=255) ctctTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGt < 2:17186/149‑1 (MQ=255) tctTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGtat > 7:256519/1‑117 (MQ=255) tctTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGtat < 8:256519/117‑1 (MQ=255) ggggTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCaaa < 6:61801/122‑1 (MQ=255) ggggTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCaaa > 5:61801/1‑122 (MQ=255) ggggTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTccaaccaa < 7:223228/149‑1 (MQ=255) | CGTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTA‑CCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTCCAACCAA > NC_002947/3312549‑3312832 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |