Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,349,963 | T→G | 8.6% | L154V (TTG→GTG) | PP_2945 → | two‑component system sensor histidine kinase/response regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,349,963 | 0 | T | G | 8.6% | 162.7 / 5.9 | 56 | L154V (TTG→GTG) | PP_2945 | two‑component system sensor histidine kinase/response regulator |
Reads supporting (aligned to +/- strand): ref base T (28/23); new base G (3/2); total (31/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGGACCCGCTGTTGCAGGTAGTCGTCTGCACTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGCAGCAGGAGATCGAGGAGCGCAAGCAGCTGGAAA > NC_002947/3349817‑3350104 | agGACCCGCTGTTGCAGGTAGTCGTCTGCACTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGACCAGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTg < 8:78944/149‑1 (MQ=255) gACCCGCTGTTGCAGGTAGTCGTCTGCACTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCt > 7:117527/1‑149 (MQ=255) gCTGTTGCAGGTAGTCGTCTGCACTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCCGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGTCAGCAAGGTGCTGGCCa > 3:315878/1‑149 (MQ=255) gCAGGTAGTCGTCTGCACTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCCGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGTCAGCAAGGTGCTGGCCatttgc < 4:315878/148‑6 (MQ=255) gCAGGTAGTCGTCTGCACTGCCTACTCGGACTATTCCTGGGATGAGTTGCGCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTgg < 8:191631/148‑1 (MQ=255) aGGTAGTCGTCTGCACTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGa > 3:9795/1‑148 (MQ=255) gtcTGCACTGCCTACTCGGACTATTCCTGGGATGAGATGCTCGACCGGCTGCAGGACCACGATCCCTTGCT‑GATAATGAAAAAACCGTTCGACAAAATCGAGGTCCAGCAAATGGCAAGCACCTTGCTGACAAAGTGTGAAATGAcac > 7:189918/1‑146 (MQ=255) tGCACTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGACAGCAAGGTGCTGGCCatttgct < 4:54706/136‑7 (MQ=255) tGCACTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGACAGCAAGGTGCTGGCCatttgct > 3:54706/1‑130 (MQ=255) cTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGc > 4:17473/1‑148 (MQ=255) cTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGAACGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGc > 4:21999/1‑148 (MQ=255) ccTACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTc < 1:284227/148‑1 (MQ=255) tACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGt > 8:265009/1‑124 (MQ=255) tACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGt < 7:265009/124‑1 (MQ=255) aCTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCt > 8:285170/1‑148 (MQ=255) tCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGa > 2:167581/1‑148 (MQ=255) ggACTATTCCTGGGATGAGTTGCTCGACCGGCTGCCGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGCCAACATCGAGGTCCAGCAAATGGCCAGCACCGTGCTGACCAAGTGGGAAATGACCCAACGAGACTCGCTGaaaa > 6:243079/1‑149 (MQ=255) ggACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGaaaa > 6:143382/1‑149 (MQ=255) gACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAAt < 4:9795/149‑1 (MQ=255) cTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GCTCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGTAAATGCACCAGc > 3:271322/1‑149 (MQ=255) cTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCCGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGc > 7:134430/1‑149 (MQ=255) cTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAg < 8:117527/148‑1 (MQ=255) cTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGc > 4:121747/1‑149 (MQ=255) tGAGTTGCTCGACCGGCTGCAGGCCCACTATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCATCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAAc < 7:110630/149‑1 (MQ=255) gCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCgg < 3:17473/148‑1 (MQ=255) gCTCGAACGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCgg < 3:21999/148‑1 (MQ=255) tCGACCGGCTGCAGGCCCACGATCGCTTGCTAGATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACATTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCggg > 1:208450/1‑148 (MQ=255) gACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGCCGAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTa > 5:263045/1‑147 (MQ=255) gACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTa > 4:139355/1‑147 (MQ=255) ccGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAgc < 3:121747/149‑1 (MQ=255) ccACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAg > 3:47771/1‑148 (MQ=255) cGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAAc > 6:340072/1‑149 (MQ=255) gATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACt > 5:21839/1‑149 (MQ=255) gATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACt > 3:107269/1‑149 (MQ=255) gATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACt > 5:26819/1‑149 (MQ=255) gCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGAc < 5:143382/148‑1 (MQ=255) cTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGAcc > 5:338051/1‑148 (MQ=255) ttGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGAcc > 7:86115/1‑147 (MQ=255) gCT‑GATCCTGATAAAACCTTTCGACAACATCGAGGTCCAGCAAATGGCAAGCACCTTGCTTACCAAGTGGGAAATGACCCTACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCa < 8:189918/147‑1 (MQ=255) cT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGc > 5:224895/1‑149 (MQ=255) aTCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAg > 7:97745/1‑149 (MQ=255) tGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAg > 2:175546/1‑149 (MQ=255) aaaaaCCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGgcg < 4:107269/149‑1 (MQ=255) aaaaaCCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGgcg < 4:47771/149‑1 (MQ=255) aaaaCCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGgcgc > 5:141309/1‑149 (MQ=255) ccGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTgca < 6:26819/149‑1 (MQ=255) ccGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTgca < 6:21839/149‑1 (MQ=255) cGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGcagcag < 6:338051/148‑1 (MQ=255) aacaTCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACACAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGcagcag > 6:277752/1‑144 (MQ=255) acaTCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACACAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGCAGCAGGAGATc < 5:277752/149‑1 (MQ=255) tCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGCAGCAGGAGATCgag < 7:285170/149‑1 (MQ=255) tCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGCAGCAGGAGATCGAGGAgcgc < 8:86115/149‑1 (MQ=255) cAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGCAGCAGGAGATCGAGGAGCGCaa > 2:169539/1‑149 (MQ=255) aTGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGCAGCAGGAGATCGAGGAGCGCAAGCAGCt < 6:224895/149‑1 (MQ=255) gCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGCAGCAGGAGATCGAGGAGCGCAAGCAGCTgg < 1:167581/148‑1 (MQ=255) cAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGCAGCAGGAGATCGAGGAGCGCAAGCAGCTGGaaa < 5:281270/149‑1 (MQ=255) | AGGACCCGCTGTTGCAGGTAGTCGTCTGCACTGCCTACTCGGACTATTCCTGGGATGAGTTGCTCGACCGGCTGCAGGCCCACGATCGCTTGCT‑GATCCTGAAAAAACCGTTCGACAACATCGAGGTCCAGCAAATGGCCAGCACCTTGCTGACCAAGTGGGAAATGACCCAACGAGCCTCGCTGAAAATGCACCAGCTCGAACAGCGGGTAGAGCGGCGTACCCAGCAACTGACCCAGGCCAGCGAGGCGCTGCAGCAGGAGATCGAGGAGCGCAAGCAGCTGGAAA > NC_002947/3349817‑3350104 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |