Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,908,623 | A→G | 8.3% | D191G (GAC→GGC) | PP_3450 → | TPR repeat‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,908,623 | 0 | A | G | 8.3% | 165.9 / 4.8 | 60 | D191G (GAC→GGC) | PP_3450 | TPR repeat‑containing protein |
Reads supporting (aligned to +/- strand): ref base A (30/25); new base G (3/2); total (33/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.39e-01 |
CTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCAGACCGGC > NC_002947/3908476‑3908771 | cTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGAc < 5:154834/149‑1 (MQ=255) aTCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTg > 3:58647/1‑149 (MQ=255) tCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTgg > 8:48070/1‑149 (MQ=255) aCTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGATCTGGccc < 3:247573/149‑1 (MQ=255) aCTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGccc > 2:143748/1‑149 (MQ=255) cTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCg > 3:322832/1‑149 (MQ=255) cagcaACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCgg < 4:58647/147‑1 (MQ=255) cagcaACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCgg < 3:93751/147‑1 (MQ=255) caACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACa < 1:143748/149‑1 (MQ=255) aCCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGt > 3:228344/1‑149 (MQ=255) cccGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGtt < 7:48070/149‑1 (MQ=255) ccGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGtt > 4:305324/1‑148 (MQ=255) cagcGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGc < 6:35586/149‑1 (MQ=255) gcCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGc < 5:100343/149‑1 (MQ=255) aGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGcccc < 3:192405/149‑1 (MQ=255) gCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCg > 7:212206/1‑149 (MQ=255) cTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGGCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGAccc > 7:119881/1‑149 (MQ=255) gCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTgg < 5:259778/106‑1 (MQ=255) gCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTgg > 6:259778/1‑106 (MQ=255) gCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCt < 4:228344/147‑1 (MQ=255) cccGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAg > 6:262176/1‑149 (MQ=255) ccGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCggg < 7:132751/110‑1 (MQ=255) ccGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCggg > 8:132751/1‑110 (MQ=255) ccGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAgg < 8:291037/149‑1 (MQ=255) cgcgAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGc > 2:155699/1‑149 (MQ=255) cgAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCt < 3:305324/149‑1 (MQ=255) cgacgaTGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCg > 6:77599/1‑149 (MQ=255) gacgaTGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGt < 5:77599/149‑1 (MQ=255) cAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAag < 1:155699/149‑1 (MQ=255) gcTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAagcagc > 6:194344/1‑149 (MQ=255) gTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCgg > 8:165693/1‑84 (MQ=255) gTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCgg < 7:165693/84‑1 (MQ=255) gTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGcc < 6:319580/114‑1 (MQ=255) gcggcgCCTGAGCAACGCCCTGCAGCGCCCCTGCCTTGAAACGGGCGACTGGCTGTCACATCAACACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTga < 7:71347/149‑2 (MQ=255) ggcgCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTAt < 6:133112/149‑1 (MQ=255) gcgcCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATg > 7:26987/1‑149 (MQ=255) aGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGccc < 5:262176/148‑1 (MQ=255) aaCGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAACACCCCGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCACAGGCCTATGCCGAGCTCACGCAGCGCCAGTATGGCGCCccgcc > 4:264734/1‑149 (MQ=255) tGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGccc > 3:128060/1‑149 (MQ=255) gCAGCGCCCCTGCCTTGAAACGGTCGACTCGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGtgt > 4:28414/1‑128 (MQ=255) cAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGccccc < 8:119881/149‑1 (MQ=255) gcgcCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCg > 3:44623/1‑148 (MQ=255) cccTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGcc > 6:213972/1‑149 (MQ=255) ccTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCcg > 4:201029/1‑149 (MQ=255) ttGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCAc > 1:291671/1‑148 (MQ=255) gACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAAt < 8:26987/148‑1 (MQ=255) gCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGaa > 7:173118/1‑148 (MQ=255) gCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGaa > 7:44478/1‑148 (MQ=255) tGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGaacaa > 6:1943/1‑149 (MQ=255) tCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGaacaa < 5:194344/147‑1 (MQ=255) ttcccGGGCCAGGTCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCCGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCa > 1:284311/3‑149 (MQ=255) gACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCa < 3:201029/149‑1 (MQ=255) cccGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCAGa > 5:124856/1‑149 (MQ=255) cccGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCAGa > 4:47839/1‑149 (MQ=255) ccGGGCCAGGTCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCcgc > 2:264472/1‑112 (MQ=255) ccGGGCCAGGTCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCcgc < 1:264472/112‑1 (MQ=255) ccGGGCCAGGTCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCg > 3:12818/1‑143 (MQ=255) ccGGGCCAGGTCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCg < 4:12818/143‑1 (MQ=255) ccGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCAGAc > 4:60622/1‑149 (MQ=255) gACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCAGACCgg > 6:305100/1‑149 (MQ=255) aCCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCAGACCGGc < 8:212206/149‑1 (MQ=255) | CTGATCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCAGACCGGC > NC_002947/3908476‑3908771 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |