Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,935,581 | C→G | 8.4% | intergenic (‑169/+109) | PP_3467 ← / ← PP_3468 | sigma‑54 dependent transcriptional regulator/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,935,581 | 0 | C | G | 8.4% | 176.1 / 3.3 | 56 | intergenic (‑169/+109) | PP_3467/PP_3468 | sigma‑54 dependent transcriptional regulator/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (26/25); new base G (2/3); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGACGGGGTACGGGCTTGGGAATTTTCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGACGCCGCCTTCCGCCCAGCCAGTTGC > NC_002947/3935440‑3935726 | tgACGGGGTACGGGCTTGGGAATTTTCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCaa > 2:256026/1‑149 (MQ=255) tgACGGGGTACGGGCTTGGGAATTTTCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCaa > 5:35164/1‑149 (MQ=255) gACGGGGTACGGGCTTGGGAATTTTCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTGGCACCAAc > 3:148037/1‑149 (MQ=255) ggTACGGGCTTGGGAATTTTCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGa < 2:50635/149‑1 (MQ=255) gTACGGGCTTGGGAATTTTCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTGGTGCGAACCCTggc < 7:144217/149‑3 (MQ=255) tACGGGCTTGGGAATTTTCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAgg < 8:108664/149‑1 (MQ=255) cTTGGGAATTTTCCGCAGTGTGCGGGTGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTgcg < 3:224987/149‑1 (MQ=255) ggAATTTTCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTg < 8:73666/148‑1 (MQ=255) aaTTTTCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTAc < 3:246675/149‑1 (MQ=255) ttCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCtg < 1:256026/148‑1 (MQ=255) ccGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTgg > 6:131932/1‑149 (MQ=255) cGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTgg < 8:313131/148‑1 (MQ=255) tgtgCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCgg < 3:251932/149‑1 (MQ=255) tgCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCggg < 4:254412/148‑1 (MQ=255) tgCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGGGGAAGCTGTCTTGCCAGGGTTCGAACCAACCCTGAGGACTGCGCTGTACCTGGTGTAGCGGGc < 8:208158/149‑1 (MQ=255) gggAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAg > 4:199394/1‑149 (MQ=255) ggAGAAATGGCTGGGCGGCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTGGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGc < 2:97386/149‑1 (MQ=255) aaTGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTCCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCcgc > 4:41875/1‑148 (MQ=255) gCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAaga < 1:53393/149‑1 (MQ=255) cTGGGCGTCATCTGGTAGGGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAagag < 3:303675/149‑1 (MQ=255) ggCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGcc > 6:156603/1‑149 (MQ=255) aTCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGa < 5:156603/148‑1 (MQ=255) tCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGa < 6:268510/127‑1 (MQ=255) tCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGa > 5:268510/1‑127 (MQ=255) cTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGt > 8:103492/1‑149 (MQ=255) gTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTCCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGt < 3:41875/146‑1 (MQ=255) gatggatTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAgg > 2:85544/1‑148 (MQ=255) gatggatTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAgg < 6:35164/148‑1 (MQ=255) gatggatTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACAAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAgg > 5:238395/1‑148 (MQ=255) tggatTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGa > 6:148903/1‑148 (MQ=255) ttGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTgcg > 4:151944/1‑89 (MQ=255) ttGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTgcg < 3:151944/89‑1 (MQ=255) ttGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATatc > 5:173701/1‑148 (MQ=255) gggCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATatcgatc < 3:199394/149‑1 (MQ=255) tgCGTAGGTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGGCTGGGTTCGCACCAACCCTGAGGAGTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATatcgatcg < 5:131932/148‑1 (MQ=255) gCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATAtcgatcga < 1:85544/149‑1 (MQ=255) gCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGat < 6:54615/135‑1 (MQ=255) gCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGat > 5:54615/1‑135 (MQ=255) cAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATa < 6:235097/149‑1 (MQ=255) gcgcAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAgg > 6:140065/1‑148 (MQ=255) gcgcAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAg < 5:148903/147‑1 (MQ=255) cAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGcccc > 7:1739/1‑139 (MQ=255) cAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGcccc < 8:1739/139‑1 (MQ=255) aaTCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTc < 7:103492/149‑1 (MQ=255) cccTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCAGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCTATAGCCAAGCCCCGTCAGGCACTCGAc > 6:85096/1‑149 (MQ=255) ccTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGAcg > 3:110408/1‑149 (MQ=255) ccTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGAcg > 2:99906/1‑149 (MQ=255) gtgGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGAcgccg > 3:166526/1‑149 (MQ=255) cTTGCCAGGGTTGGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGACGCCGCCTTCCGCcca < 4:148037/149‑1 (MQ=255) ttGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGACGCCGCCTTCCGCccag > 6:50016/1‑149 (MQ=255) gCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGACGCCGCCTTCCGCccagc > 5:304994/1‑148 (MQ=255) tcAGGGTTGGTGCGAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGACGCCGCCTTCCGCccagc > 3:298213/2‑147 (MQ=255) ccAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGACGCCGCCTTCCGCccagc > 7:202478/1‑147 (MQ=255) cAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGACGCCGCCTTCCGCccagccag > 2:60654/1‑149 (MQ=255) gTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGACGCCGCCTTCCGCCCAGCCAGTtgc > 8:255093/1‑149 (MQ=255) gTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGACGCCGCCTTCCGCCCAGCCAGTtgc > 3:32295/1‑149 (MQ=255) | TGACGGGGTACGGGCTTGGGAATTTTCCGCAGTGTGCGGGAGAAATGGCTGGGCGTCATCTGGTAGTGGATGGATTGGGGCGTAGCTGGCCAGGTTAATTGAAGCTGGCGCAATCCCTGTGGAAGCTGGCTTGCCAGGGTTCGCACCAACCCTGAGGACTGCGCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCCTCGAGGTCAATCAGGGATATCGATCGATATCACCAATAGCCAAGCCCCGTCAGGCACTCGACGCCGCCTTCCGCCCAGCCAGTTGC > NC_002947/3935440‑3935726 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |