Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,125,301 | A→T | 16.7% | intergenic (+30/+51) | PP_3628 → / ← PP_3629 | choline/carnitine/betaine transporter family protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,125,301 | 0 | A | T | 16.7% | 80.0 / 9.8 | 36 | intergenic (+30/+51) | PP_3628/PP_3629 | choline/carnitine/betaine transporter family protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (15/15); new base T (4/2); total (19/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.62e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.37e-01 |
ATCGAGAAGGCCGTACTGTATGGCGCGGTGAAGCATGGGGAGGAGTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGGCCGCCGCACGGTCGGG > NC_002947/4125155‑4125444 | aTCGAGAAGGCCGTACTGTATGGCGCGGTGAAGCATGGGGAGGAGTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAag > 4:132193/1‑149 (MQ=255) aTCGAGAAGGCCGGACTGTATGGCGCGGTGAAGCATGGGGAGGAGTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTa < 5:253189/147‑1 (MQ=255) gagaAGGCCGTACTGTATGGCGCGGTGAAGCATGGGGAGGAGTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAagca < 4:305212/148‑1 (MQ=255) agaAGGCCGTACTGTATGGCGCGGTGAAGCATGGGGAGGAGTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAagcagc < 3:171177/149‑1 (MQ=255) agaAGGCCGTACTGTATGGCGCGGTGAAGCATGGGGAGGAGTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAagcagc < 7:93850/149‑1 (MQ=255) ggCCGTACTGTATGGCGCGGTGAAGCATGGGGAGGAGTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTTAGCAGCCCGt < 3:72976/149‑1 (MQ=255) gCCGTACTGTATGGCGCGGTGAAGCATGGGGAGGAGTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTTAGCAGCCCGtg < 6:274090/149‑2 (MQ=255) cTGTAGTGCGCGGTGATGCATGGGGAGGAGTTCTACTTTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAATCCACGGGCTGCTAAGCAGCCCGTTCGCGa < 6:15085/148‑1 (MQ=255) tGGCGCGGTGAAGCATGGGGAGGAGTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCga < 4:105445/148‑1 (MQ=255) ggaggaGTTCTACATTGTGGCGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGTAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACa > 6:1307/1‑149 (MQ=255) gaggagTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACAt < 5:322495/149‑1 (MQ=255) cATTGTGGTGCAGGAGAAGAAGACATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCtt < 8:37145/148‑1 (MQ=255) aTTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGaaa > 6:171267/1‑134 (MQ=255) gagaAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAAc > 6:175223/1‑123 (MQ=255) gagaAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAAc < 5:175223/123‑1 (MQ=255) gCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGc < 3:132193/149‑1 (MQ=255) aGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGAAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCg > 8:29801/1‑148 (MQ=255) cGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATc < 8:164465/149‑1 (MQ=255) cAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTg > 5:324079/1‑149 (MQ=255) aaCCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGcatca > 8:15136/1‑149 (MQ=255) cccGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATg < 7:29801/149‑1 (MQ=255) cTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCg > 5:158931/1‑148 (MQ=255) aCGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAac < 5:1307/148‑1 (MQ=255) ccGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAacgcacgc > 5:286757/1‑143 (MQ=255) ccGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAacgcacgc < 6:286757/143‑1 (MQ=255) ccGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGgcc > 7:83698/1‑149 (MQ=255) cGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGgccg > 8:229750/1‑149 (MQ=255) cGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGgccg > 1:87252/1‑149 (MQ=255) aaCCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGGCcgccgc < 6:324079/149‑1 (MQ=255) gaaCGGGCTGCTTAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCACCCCCCCCCCTATCTTGGCCCCATCGATATTCCCAATCTGAAAATTGCCCTCGAACGCCCCATTGGcccccgag > 2:339380/3‑146 (MQ=255) cACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGGCCGCCGCACg > 6:136205/1‑149 (MQ=255) cACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGGCCGCCGCACg > 4:217015/1‑149 (MQ=255) aaCGGGCTGCTTAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGGCCGCCGCACg > 5:153292/2‑149 (MQ=255) aCGGGCTGCTTAGCAGCCCGTTCGCGATCCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGGCCGCCGCACgg > 6:49622/1‑149 (MQ=255) cGGGCTGCTTAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGGCCGCCGCACGGt > 8:263332/1‑149 (MQ=255) ctAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGGCCGCCGCACGGTCggg > 6:122851/1‑146 (MQ=255) ctAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGGCCGCCGCACGGTCggg < 5:122851/146‑1 (MQ=255) | ATCGAGAAGGCCGTACTGTATGGCGCGGTGAAGCATGGGGAGGAGTTCTACATTGTGGTGCAGGAGAAGAAGGCATCGGCCAAGACAGCGGCAGAGGCCGAAGTAACCCGCAACTGACGGCGTCAACCCGAAAACCACGGGCTGCTAAGCAGCCCGTTCGCGATGCGAGACCGCGCCTGCTGAAACATGGATCTGCTTCAACCTTCCAACGCCGCCGCTATCTTGGCCACATCGATCTTGCCCATCTGCATCATGGCCTCGAACGCACGCTTGGCCGCCGCACGGTCGGG > NC_002947/4125155‑4125444 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |