Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,206,507 | T→A | 7.0% | R423S (AGA→AGT) | PP_3691 ← | DNA helicase‑related protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,206,507 | 0 | T | A | 7.0% | 170.8 / 3.2 | 57 | R423S (AGA→AGT) | PP_3691 | DNA helicase‑related protein |
Reads supporting (aligned to +/- strand): ref base T (28/25); new base A (2/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.26e-01 |
ATCCTCCCGCTCACGCTGTTCGTAAAGAGCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGACTACCACCTCGTGGATTTCATCTGGGATGCCCGC > NC_002947/4206360‑4206650 | aTCCTCCCGCTCACGCTGTTCGTAAAGAGCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGctc > 8:228033/1‑149 (MQ=255) cGCTCACGCTGTTCGTAAAGAGCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGc > 5:2247/1‑149 (MQ=255) aCGCTGTTCGTAAAGAGCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATc < 3:8305/148‑1 (MQ=255) aCGCTGTTCGTAAAGAGCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCt > 6:257612/1‑149 (MQ=255) gCTGTTCGTAAAGAGCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTg < 7:164100/149‑1 (MQ=255) tAAAGAGCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTc > 6:5994/1‑147 (MQ=255) tAAAGAGCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCaa > 7:207771/1‑149 (MQ=255) aaGAGCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAaga < 1:298276/149‑1 (MQ=255) gagCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAgg < 8:207771/149‑1 (MQ=255) agCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGgt > 4:117773/1‑149 (MQ=255) tCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTc > 7:231223/1‑148 (MQ=255) ccGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGaa < 7:228033/149‑1 (MQ=255) ccGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGaa < 8:231223/149‑1 (MQ=255) cgcgGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATGCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAaga < 7:169803/136‑1 (MQ=255) cgcgGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAagag < 2:294515/137‑1 (MQ=255) cgcgGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAagag > 1:294515/1‑137 (MQ=255) cgcgGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGACCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAaga > 8:169803/1‑136 (MQ=255) gATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGaa < 5:5994/149‑1 (MQ=255) gCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAaga > 2:172769/1‑127 (MQ=255) gCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAaga < 1:172769/127‑1 (MQ=255) ccGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCaa < 7:149990/149‑1 (MQ=255) ccGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCaa < 3:117773/149‑1 (MQ=255) gTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCaa > 4:70522/1‑147 (MQ=255) cATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCt < 2:90206/149‑1 (MQ=255) aTAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCtt > 7:226937/1‑149 (MQ=255) aTAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCAGCTTGCCAAAATATCATCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGATCAATTGGCCATCTAGAAGTTCAAGAGGTTGTTTACAAGCGAAAGATCCAAGAGCtt > 8:147903/1‑149 (MQ=255) gTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGATTGTCTCGAAGCGAAAGATCCAAGAGCTTGCGCt > 5:302300/1‑149 (MQ=255) aGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGTAAGATCCAAGAGCTTGCGCTGcc < 7:200333/149‑1 (MQ=255) cTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGgttgtt < 4:213732/113‑1 (MQ=255) cTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGgttgtt > 3:213732/1‑113 (MQ=255) tGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGCTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTg > 5:103993/1‑149 (MQ=255) gccGATTGCCAAAATATCCTCGAGCGCGCCCGGGTCGTGTGACTCAAGTTTCAGCGATCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCTAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCg < 3:66864/147‑1 (MQ=255) cccGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGCTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGa < 6:103993/149‑1 (MQ=255) cccGATTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCg < 7:147903/148‑1 (MQ=255) gCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCCCATGCCACGCCGATCTGCCGGGTCGAGCt > 7:142441/1‑149 (MQ=255) gCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCt > 5:245619/1‑149 (MQ=255) gCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCt > 2:330515/1‑149 (MQ=255) cTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCtt > 3:172090/1‑149 (MQ=255) attGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCtt < 5:257612/148‑1 (MQ=255) gCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTc < 3:324562/147‑1 (MQ=255) aaaaTATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGa > 6:178079/1‑146 (MQ=255) aaaaTATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGa > 3:139160/1‑146 (MQ=255) tCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGAc > 6:125498/1‑149 (MQ=255) tCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGAc > 1:189709/1‑149 (MQ=255) tCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCACTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGAc > 8:196342/1‑149 (MQ=255) tCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCACTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGAc > 8:201681/1‑149 (MQ=255) gcCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCCCCTGcc > 6:18713/1‑102 (MQ=255) gcCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGACTACCACCt > 4:143307/1‑149 (MQ=255) gtcgggtGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGACTACCACCTCGTGGa < 8:226937/149‑1 (MQ=255) cgggtGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGACTACCACCTCGTGGAtt < 6:2247/149‑1 (MQ=255) tGACTCAAGTTTCAGCGCACTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGACTACCACCTCGTGGATTTCAt < 7:196342/149‑1 (MQ=255) tGACTCAAGTTTCAGCGCACTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGACTACCACCTCGTGGATTTCAt < 7:201681/149‑1 (MQ=255) cTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGaa < 4:189756/115‑1 (MQ=255) cTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGaa > 3:189756/1‑115 (MQ=255) cTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGACTACCACCTCGTGGATTTCATCt < 5:178079/148‑1 (MQ=255) cTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGATTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGACTACCACCTCGTGGATTTCATCTg < 6:302300/149‑1 (MQ=255) cAGCGCTCTCTTGGCCATCTTGAAGTACAACAGCTTGTTACGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGACCTTCGAAAGAACATCGACTACCACCTCCAGGATTTCAACAGGGATgcccg > 7:170078/1‑149 (MQ=255) aGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGACTACCACCTCGTGAATTTCATCTGGGATgcccgc > 6:334249/1‑149 (MQ=255) | ATCCTCCCGCTCACGCTGTTCGTAAAGAGCGCGCTCCCGCGGATCGGCACCGTCCATAAGGTCAGGCCTGGTCAGCAGCTTCAGCGACTGCCCGCTTGCCAAAATATCCTCGAGCGCGCCCGGGTCGGGTGACTCAAGTTTCAGCGCTCTCTTGGCCATCTTGAAGTTCAAGAGGTTGTTTCGAAGCGAAAGATCCAAGAGCTTGCGCTGCCACCTGCCAAGCCGATCTGCCGGGTCGAGCTTCGAAAGATCTTCGACTACCACCTCGTGGATTTCATCTGGGATGCCCGC > NC_002947/4206360‑4206650 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |