Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,340,589 | G→A | 6.9% | V82M (GTG→ATG) | PP_3814 → | polyamine ABC transportersubstrate‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,340,589 | 0 | G | A | 6.9% | 171.0 / 2.1 | 58 | V82M (GTG→ATG) | PP_3814 | polyamine ABC transportersubstrate‑binding protein |
Reads supporting (aligned to +/- strand): ref base G (25/29); new base A (2/2); total (27/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGGGCGGTACGACCCAGGACGCCCAGAAAGAAGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTCGTG > NC_002947/4340446‑4340735 | ggggCGGTACGACCCAGGACGCCCAGAAAGAAGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTc > 6:206697/1‑149 (MQ=255) gggCGGTACGACCCAGGACGCCCAGAAAGAAGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTc > 2:192960/1‑148 (MQ=255) gTACGACCCAGGACGCCCAGAAAGAAGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGAGGTAACGTGCAGTGGGACGTGGTCGACGTc > 7:12947/1‑149 (MQ=255) aCCCAGGACGCCCAGAAAGAAGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGc < 1:49890/149‑1 (MQ=255) cacAGGACGCCCAGAAAGAAGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACTGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCCGTGGGACGTGGTCGACGTCGacgac > 4:202831/3‑145 (MQ=255) aCGCCCAGAAAGAATCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACttt < 8:147733/149‑1 (MQ=255) cGCCCAGAAAGAAGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACttt < 2:45376/148‑1 (MQ=255) cccAGAAAGAAGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGcc < 2:59934/149‑1 (MQ=255) cAGAAAGAAGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGGAGCCGACTTTGCCCt > 5:155229/1‑149 (MQ=255) gaaagaaGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑c > 2:249630/1‑149 (MQ=255) gaaagaaGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑c < 2:162751/149‑1 (MQ=255) gaaagaaGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑c < 5:206697/149‑1 (MQ=255) aagaagCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGGAGCCGACTTTGCCCTG‑CGt < 6:155229/149‑1 (MQ=255) aagaagCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGt < 7:33211/149‑1 (MQ=255) ggCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGc < 2:335009/148‑1 (MQ=255) ccGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGaa < 7:31594/149‑1 (MQ=255) cGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAg < 8:172436/149‑1 (MQ=255) tACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGc < 6:104232/149‑1 (MQ=255) cGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTg > 8:275586/1‑149 (MQ=255) aCCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGGCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCg > 6:74367/1‑148 (MQ=255) cAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAAc > 2:54912/1‑149 (MQ=255) cAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAAc > 3:149328/1‑149 (MQ=255) aaaGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTGTCGTGCCGCCAGCGAAGGCCTGCTCGAAc < 1:192960/149‑1 (MQ=255) gAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACt > 2:74797/1‑149 (MQ=255) tCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCACGCTCCAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAAc < 6:342919/149‑1 (MQ=255) cAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACATGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAAc > 8:122387/1‑148 (MQ=255) cAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACATGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAAc > 8:117745/1‑148 (MQ=255) aaGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCa < 1:54912/149‑1 (MQ=255) ggTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGa < 5:74367/149‑1 (MQ=255) ggTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCACTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAAc > 6:155498/1‑145 (MQ=255) gCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAg < 8:144336/142‑1 (MQ=255) gCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAg > 7:144336/1‑142 (MQ=255) aGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAgcgc > 4:159445/1‑149 (MQ=255) ggACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAgcgc > 4:77759/1‑148 (MQ=255) ggACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAgcgc > 8:46/1‑148 (MQ=255) gACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGa > 1:181191/1‑149 (MQ=255) cACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTc > 5:127497/1‑118 (MQ=255) cACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTc < 6:127497/118‑1 (MQ=255) ccGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGAc < 2:181191/149‑1 (MQ=255) cTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCAc < 3:77759/149‑1 (MQ=255) cTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCAc < 4:149328/149‑1 (MQ=255) tACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACg > 4:224139/1‑149 (MQ=255) ggCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCATCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCt > 7:117013/1‑148 (MQ=255) gCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTc < 3:224139/149‑1 (MQ=255) aaGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCATCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGt < 1:74797/149‑1 (MQ=255) tCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTcc > 4:104814/1‑149 (MQ=255) ccATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCAt < 5:155498/149‑1 (MQ=255) cATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATg < 7:275586/149‑1 (MQ=255) tCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTc > 7:283098/1‑149 (MQ=255) tCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTc > 2:164646/1‑149 (MQ=255) agCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTc < 5:119464/149‑1 (MQ=255) aCGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCAttcttc < 8:117013/149‑1 (MQ=255) aCGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCAttcttc < 3:202831/149‑1 (MQ=255) gTGCAGTGGGACATGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCAttcttctt < 7:122387/149‑1 (MQ=255) gTGCAGTGGGACATGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCAttcttctt < 7:117745/149‑1 (MQ=255) cAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCATTCTTCTtctc > 7:214866/1‑149 (MQ=255) tgtccGTGTTCGACGTCGAAGCCGACTTTGCGCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTc < 7:292184/145‑1 (MQ=255) aCGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCATTCTTCTTCTCATTCGTg > 6:333597/1‑149 (MQ=255) | GGGGCGGTACGACCCAGGACGCCCAGAAAGAAGCGTGGGCCGTACCGTTCACCAAAGCCACGAACATCAAGGTCGTGCAGGACGGCCCCACCGACTACGGCAAGCTCAAGGCCATGGTCGAGAGCGGTAACGTGCAGTGGGACGTGGTCGACGTCGAAGCCGACTTTGCCCTG‑CGTGCCGCCAGCGAAGGCCTGCTCGAACCCCTCGACTTCAACCAGATCAAGCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTCGTG > NC_002947/4340446‑4340735 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |