| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,382,822 | T→C | 11.1% | intergenic (‑33/+229) | PP_3857 ← / ← PP_3858 | hypothetical protein/tail fiber protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,382,822 | 0 | T | C | 11.1% | 210.6 / 15.2 | 82 | intergenic (‑33/+229) | PP_3857/PP_3858 | hypothetical protein/tail fiber protein |
| Reads supporting (aligned to +/- strand): ref base T (42/30); new base C (5/4); total (48/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.45e-01 | |||||||||||
CGTATCGACACCGCCGTTGACATAGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCTCATTCGTGAGCGGCC > NC_002947/4382676‑4382969 | cGTATCGACACCGCCGTTGACATAGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTgg > 2:70213/1‑149 (MQ=255) tCGACACCGCCGTTGACATAGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCggg > 1:133451/1‑149 (MQ=255) tCGACACCGCCGTTGACATAGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCggg > 1:143813/1‑149 (MQ=255) tCGACACCGCCGTTGACATAGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCAcggcgg < 2:10495/148‑1 (MQ=255) cgccgTTGACATAGACATGCTGCAGCTCAGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGt > 1:150139/1‑149 (MQ=255) gccgTTGACATAGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGt > 8:221723/1‑148 (MQ=255) ccgTTGACATAGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCACGGCGGGttttttgat < 4:115240/149‑7 (MQ=255) aTAGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGAttt > 8:292600/1‑149 (MQ=255) aTAGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGAttt > 1:67670/1‑149 (MQ=255) aGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGAttt > 6:24816/1‑147 (MQ=255) gACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGAttt > 7:1275/1‑146 (MQ=255) gACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAg > 6:11221/1‑149 (MQ=255) gACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAg < 3:43187/149‑1 (MQ=255) cTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGAt > 4:237157/1‑132 (MQ=255) cTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGAt < 3:237157/132‑1 (MQ=255) gACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGt > 6:239049/1‑149 (MQ=255) tctTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGctc > 5:277181/1‑149 (MQ=255) tctTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCACGGCGGGttttttg > 6:189105/1‑109 (MQ=255) tctTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCACGGCGGGttttttg < 5:189105/113‑5 (MQ=255) gATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACACTCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGGCACGCTCTACgg < 2:130679/149‑1 (MQ=255) cattgcGGCTTCGGTCAACAGGCCTGAATAGGCGTCCAATGCTGAAATATCAGTCATTCACTTT‑TCTCCAGTCATTAAAATACCGGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGAt < 2:241669/148‑1 (MQ=255) cattgcCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGAtt < 5:24816/149‑1 (MQ=255) cattgcCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGAtt < 5:11221/149‑1 (MQ=255) cattgcCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGAtt < 7:5715/149‑1 (MQ=255) cattgcCGCTTCGCACAACAGGCCTGAATAGGCTTCCAAACCTTAAATATCAGTCATTCCCTTT‑TCTCCAGCCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGAtt < 1:70213/149‑1 (MQ=255) attgcCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTg < 6:277181/149‑1 (MQ=255) ttgcCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTAcgc < 8:156093/128‑1 (MQ=255) ttgcCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTAcgc > 7:156093/1‑128 (MQ=255) ttgcCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTg > 3:174532/1‑148 (MQ=255) ttgcCGCTTCGGACAACAGGCCTGAATAGGCTGCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTgg < 2:150139/149‑1 (MQ=255) ccGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTTATCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGAt > 1:267189/1‑149 (MQ=255) gCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGc > 5:198622/1‑149 (MQ=255) gCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCACGGCGGGttttttg < 3:46255/82‑5 (MQ=38) gCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCACGGCGGGttttttg > 4:46255/1‑78 (MQ=38) ccTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATcggcgg > 4:32386/1‑149 (MQ=255) cTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCggcggc < 7:292600/149‑1 (MQ=255) gAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCggcggc > 2:331677/1‑147 (MQ=255) aaTAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGa < 6:290328/89‑1 (MQ=255) aaTAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGa > 5:290328/1‑89 (MQ=255) aaTAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGa < 6:198622/148‑1 (MQ=255) tAGGATTCCATAGCTGAAATATCAGTCATTCACTTT‑TCTCCTGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTGACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCt < 3:272139/149‑1 (MQ=255) gCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGCGCTGtt > 6:329612/1‑149 (MQ=255) gCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGtt > 4:233873/1‑149 (MQ=255) gCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGtt > 6:271397/1‑149 (MQ=255) gCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGtt < 7:221723/149‑1 (MQ=255) ttCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTa > 5:24985/1‑149 (MQ=255) aaaGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGcatcat > 8:257725/1‑128 (MQ=255) aaaGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGcatcat < 7:257725/128‑1 (MQ=255) tCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGt > 8:252695/1‑149 (MQ=255) cAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGt > 4:93788/1‑148 (MQ=255) tCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTcatc < 4:174532/149‑1 (MQ=255) tCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTca < 1:134427/147‑1 (MQ=255) tCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGACGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACCAcatc > 7:160945/1‑149 (MQ=255) aTTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTca > 8:13469/1‑145 (MQ=255) aTTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTca < 7:13469/145‑1 (MQ=255) ttCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTcatcca > 3:41563/1‑148 (MQ=255) tCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGAGGCGGGTTTGGGTCAAACGAATTGAGCAGGCTCGTTAAGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCTGCGAGCTGTTAACCATTACGAAAAAAGTaataga > 8:287800/1‑144 (MQ=255) tCAATTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGGGGGTTTGGTTCAAAGGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTca < 7:287800/143‑1 (MQ=255) cACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTcatccatc < 8:1275/148‑1 (MQ=255) aCTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCaa > 5:346901/1‑149 (MQ=255) ttt‑tCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAAt > 4:293955/1‑148 (MQ=255) ttt‑tCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATg > 2:312147/1‑149 (MQ=255) ttt‑tCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATg > 7:94233/1‑149 (MQ=255) ctcCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCtt < 2:67670/148‑1 (MQ=255) tcCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGGTTCa > 5:209764/1‑149 (MQ=255) tcCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCa > 3:59860/1‑149 (MQ=255) tcCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCa > 6:140760/1‑149 (MQ=255) tcCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGACTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCa > 5:232351/1‑149 (MQ=255) cAGGCATCAAAAAACCCGCCTTGGCGGGTTTGTGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTc < 8:160945/146‑1 (MQ=255) cAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCAt > 3:25290/1‑148 (MQ=255) aTCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTcatccatc < 7:137308/133‑1 (MQ=255) aTCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTcatccatc > 8:137308/1‑133 (MQ=255) aTCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCt < 5:179226/149‑1 (MQ=255) tCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCt > 3:150605/1‑148 (MQ=255) aaaaaaCCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCTCAt < 7:252695/149‑1 (MQ=255) ccaaaCCCGCCACGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTAc > 3:22085/3‑112 (MQ=255) ccaaaCCCGCCACGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTAc < 4:22085/110‑1 (MQ=255) ccaaaCCCGCCACGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCTCAtt > 5:308433/3‑149 (MQ=255) ccaaaCCCGCCACGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCTCAt > 4:172915/3‑148 (MQ=255) aaaaCCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGGAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCTCATTc < 3:233873/149‑1 (MQ=255) cccGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCTCATTCGTGa < 3:246291/149‑1 (MQ=255) ccgccgTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCTCATTCGTGAg > 8:33961/1‑149 (MQ=255) gTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCTCATTCGTGAGCGGcc < 2:143813/149‑1 (MQ=255) | CGTATCGACACCGCCGTTGACATAGACATGCTGCAGCTCCGACGCGCTCTTGGATTGCATTGCCGCTTCGGACAACAGGCCTGAATAGGCTTCCAAAGCTGAAATATCAGTCATTCACTTT‑TCTCCAGGCATCAAAAAACCCGCCGTGGCGGGTTTGGGTCAAACGATTTGAGCAGGCTCGTTACGCGTCACGCTCTACGGCGATTGGATCGCCAGCATCATCGGCGGCGAGCTGTTTACCATTACGCAAAACGTCATCCATCAATGCTTCATGACGCTCATTCGTGAGCGGCC > NC_002947/4382676‑4382969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |