Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,838,293 | C→T | 6.9% | G19G (GGC→GGT) | ccoP‑I → | cbb3‑type cytochrome c oxidase subunit |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,838,293 | 0 | C | T | 6.9% | 169.7 / 2.0 | 58 | G19G (GGC→GGT) | ccoP‑I | cbb3‑type cytochrome c oxidase subunit |
Reads supporting (aligned to +/- strand): ref base C (27/26); new base T (2/2); total (29/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
CGTGATTTCGCCGAAGCGCGCCTGCTGCCCTTCGTCGACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGCGTTCT > NC_002947/4838145‑4838441 | cGTGATTTCGCCGAAGCGCGCCTGCTGCCCTTCGTCGACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGc < 1:217753/149‑1 (MQ=255) gTGATTTCGCCGAAGCGCGCCTGCTGCCCTTCGTCGACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGcc < 4:247377/149‑1 (MQ=255) tttCGCCGCAGAGCGCCTGCGTCCCTTCCTCGACGACCGCCTGCCCACTGCCGGGGAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGAc < 7:134688/149‑1 (MQ=255) tttCGCCGAAGCGCGCCTGCTGCCCTTCGTCGACGACCGCCTGCCCACAGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGa < 3:222372/148‑1 (MQ=255) ttCGCCGAAGCGCGCCTGCTGCCCTTCGTCGACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGTCTGATTGGCCTGAcc > 6:83601/1‑149 (MQ=255) gAAGCGCGCCTGCTGCCCTTCGTCGACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGgctg > 1:24538/1‑149 (MQ=255) tgcCCTTCGTCGACGACCGCCTGCACACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCAcgc < 8:60678/149‑1 (MQ=255) cccTTCGTCGACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCAcgcg > 5:80981/1‑148 (MQ=255) cgtcgACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAgg < 4:180514/148‑1 (MQ=255) cgtcgACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAgg < 6:80981/148‑1 (MQ=255) gtcgACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGc > 8:4540/1‑149 (MQ=255) tcgACGTCCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTATGTACATCAGCGTAGTGACCATCGGTAGCCTGATTGGCCTGACCTGgc < 1:76087/125‑1 (MQ=255) tcgACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTCgc > 2:76087/1‑125 (MQ=255) gacgacCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCag > 7:956/1‑149 (MQ=255) cGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGTCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGcaa > 4:43280/1‑148 (MQ=255) cGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGTCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGcaa > 4:39013/1‑148 (MQ=255) cccACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAAcacc < 7:4540/149‑1 (MQ=255) aCTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACaccacc > 4:239325/1‑149 (MQ=255) gCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGTCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACcgac < 3:43280/149‑1 (MQ=255) ccGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGTCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACcgac < 3:39013/148‑1 (MQ=255) ccGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACcga < 5:52871/147‑1 (MQ=255) cGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACcgacga < 5:62956/149‑1 (MQ=255) ggCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACgaga < 3:161162/149‑1 (MQ=255) cAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGAcc < 7:39352/149‑1 (MQ=255) ccTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATggg < 4:79679/148‑1 (MQ=255) aGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAacac < 6:150769/118‑1 (MQ=255) ggAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACg < 3:239325/149‑1 (MQ=255) tAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCa > 3:201830/1‑148 (MQ=255) cGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATa > 4:257708/1‑147 (MQ=255) gggCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATagag > 8:270455/1‑149 (MQ=255) gggCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATagag < 8:182401/149‑1 (MQ=255) aTGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGTCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTa < 5:83601/149‑1 (MQ=255) accaccTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACg < 2:137730/148‑1 (MQ=255) caccTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGcaac > 4:79555/1‑94 (MQ=255) caccTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGcaac < 3:79555/94‑1 (MQ=255) accTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTAc < 6:63153/144‑1 (MQ=255) accTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTAc > 5:63153/1‑144 (MQ=255) ttCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAAccc > 3:290761/1‑149 (MQ=255) gAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTg < 4:290761/148‑1 (MQ=255) gtacgtacATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCAACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACg > 8:210146/1‑135 (MQ=255) tacgtacATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGccc > 5:151030/1‑148 (MQ=255) tacgtacATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGccc > 7:52466/1‑148 (MQ=255) gtacATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAgt > 2:253680/1‑149 (MQ=255) cATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAgtggt < 6:151030/149‑1 (MQ=255) cATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAgtgg < 1:253680/148‑1 (MQ=255) cATCAGCGTACTGACCATCGGTAGACTGATTGGACTGACGTTGCTGCTGCTCGTCACGCGCAAGGTCCAGAGCAACAACACCACCGACGAGACCATGTGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAgtgg < 4:201830/148‑1 (MQ=255) tCAGCGTACTGACCATCGGTAGCCTGATTGTCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCCACGGCATAGACGAGTACGACAACCCGATGCCCAAgtcgtgc > 5:268620/1‑148 (MQ=255) cGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCt < 7:270455/149‑1 (MQ=255) aCTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAgtggt > 6:208161/1‑140 (MQ=255) aCTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAgtggt < 5:208161/140‑1 (MQ=255) cATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCg > 7:254067/1‑149 (MQ=255) cATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCg > 1:336193/1‑149 (MQ=255) cATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCg > 1:234349/1‑149 (MQ=255) gTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCt > 6:80095/1‑135 (MQ=255) gTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCt < 5:80095/135‑1 (MQ=255) gTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTgg > 3:286350/1‑148 (MQ=255) ccTGATTGGCCTGACCTGGCTGCTGCTCGCGACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCt < 8:956/149‑1 (MQ=255) aTTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGc > 5:134375/1‑149 (MQ=255) gCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGCGTtc > 5:124771/1‑149 (MQ=255) gCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGCGTtc > 2:2589/1‑149 (MQ=255) ccTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGCGTtct > 1:312774/1‑149 (MQ=255) | CGTGATTTCGCCGAAGCGCGCCTGCTGCCCTTCGTCGACGACCGCCTGCCCACTGCCGGGCAGGAGCCTGCTGCAAAAAGGAGTAACGGGCAATGACCACCTTCTGGAGTACGTACATCAGCGTACTGACCATCGGTAGCCTGATTGGCCTGACCTGGCTGCTGCTCGCCACGCGCAAGGGCCAGAGCAACAACACCACCGACGAGACCATGGGCCACAGCTTCGACGGCATAGAGGAGTACGACAACCCGCTGCCCAAGTGGTGGTTCTGGCTGTTCGTTGGCACCTTGGCGTTCT > NC_002947/4838145‑4838441 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |