| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 85.2% | 74.2 / 7.7 | 27 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (0/4); new base A (13/10); total (13/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.78e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGC > NC_002947/278605‑278882 | aGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTc > 7:99067/1‑148 (MQ=255) tCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTacac > 2:55065/1‑148 (MQ=255) aCGTGTGCTGGTCAGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTc < 6:155009/148‑1 (MQ=255) gCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGAt < 1:55065/147‑1 (MQ=255) cTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATc > 6:87901/1‑147 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 5:87901/147‑1 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 6:24924/146‑1 (MQ=255) tccggtATATATACCCTAATGATTTATAAAATTTTTATGCACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCCGG‑TAAA‑CCCGCTGCGACACACATGGCGCAAGATATGTGCaaggta > 8:28508/1‑141 (MQ=255) ggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGc > 3:48394/1‑148 (MQ=255) taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACCCACATGCCGCAAGATCTGTGCACGGTAGGAGCGGGttttc > 6:93738/1‑146 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcg > 8:112585/1‑148 (MQ=255) cTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATATGTGCACTGTAGGAGCGGGTTTACCcg > 4:114767/1‑147 (MQ=255) ttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCAATGTAGGAGCGGGTTTACCCGCGTAAGGGc > 2:58427/1‑148 (MQ=255) ttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCGACCCACATGCCTCAAGATCTGGTCACTGTAGGAGCGGGTTTACCCGCGCAAGGGc > 2:55804/1‑148 (MQ=255) taAAATTTTTAAGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCGCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCg < 8:126629/147‑1 (MQ=255) taactTTTTGGAATTTTTATAGAAGGTGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCACGATCTGTGCACTTTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 8:93441/148‑1 (MQ=39) taactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 4:48394/148‑1 (MQ=255) aacctTTTTGCAATATTAATCGAAGGGGGATTTGTTACCGAGGGCCCGGGCTCTTCGCGGG‑T‑AACCCCGCTCCTCCACACATCCCCCAAGAGCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 7:81152/145‑1 (MQ=37) ggAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCACCAACCCACCATCCTCAAGATCGGTGCACTGTAGGACCGGGTTTACCCGCGAAAGGGCCCGAACAGCTTTACACGGAGGCCGCAGt > 8:28806/1‑148 (MQ=255) atatTTATAGAAGGGGGATTTGTTCCAGCGGGGCCGGGCGCTTCGCGGG‑TAAA‑CCCGCTCCTACACCCATGCCGCAAGATCGGTGCACTGTCGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTccc < 4:52244/148‑1 (MQ=37) ataGAAGGGGCATTGGTAACCCCGGTGCCCGGCGCTGCGCGGGAA‑AA‑CCCGCTCCTACACACATCCCTCAAGATCTGTGCACTGTCGCAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGa < 2:22589/144‑1 (MQ=255) ttGTAACAGAGGGGCCGGGCCCTTCGCGGG‑T‑AACCCCGCTCCTACACACATGCCTCAAGATCTGGCCACTGTAGGAGGGGTTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAAc < 4:10167/148‑1 (MQ=255) gCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACCCACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGGTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGCGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGct > 8:119748/1‑148 (MQ=255) ccGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCACGAGCTGTGCACTGTCGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGctc < 7:144722/148‑1 (MQ=255) ggCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCACGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttc < 3:71164/148‑1 (MQ=255) ttCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATATGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGACAGGTTTACTCGGAGGCCGCAGTACCGCGGAACGTGCGCAACAACTGCCGCGTACCCTcttacatag > 2:98656/1‑142 (MQ=37) cgcgGG‑A‑AACCCCGCGCCTCCACACAGGCCCCAAGATCTGGGCCGTGTCGGCGGGGGTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGgc < 5:16724/148‑1 (MQ=255) | AGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGC > NC_002947/278605‑278882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |