| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,070,246 | 1 | . | G | 87.5% | 57.6 / 4.5 | 25 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base G (12/9); total (13/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.58e-01 | |||||||||||
| * | NC_002947 | 1,070,246 | 2 | . | A | 87.5% | 63.3 / 4.8 | 25 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base A (12/9); total (13/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01 | |||||||||||
CGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTA > NC_002947/1070103‑1070377 || cgccgcCGATTCGCAGCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑G‑‑a < 7:79320/146‑1 (MQ=255) tGCTGAGCCCGGCATGGCTCGCGGTGCTGTGGGTGGCTTTCCAGCTGAAGAAGGCTCGCCCGGCCAAGGGCTGATCGGGTTTGGTCGTCAGGGGGAGGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTc < 5:14406/148‑1 (MQ=37) gCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCt > 2:139122/1‑146 (MQ=255) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGGTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCGa < 7:45478/148‑1 (MQ=38) tGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTATGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGa < 6:57069/147‑1 (MQ=255) cccGGCATGGATCGCTGTGCTGTGGGTGGCGTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑GATATCGAGCACCGCCCGCGCGGCGCTCGATCTca < 7:62863/148‑1 (MQ=38) cGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTGCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGaaa < 7:149506/148‑1 (MQ=255) ctgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGc < 8:45079/148‑1 (MQ=255) tgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTCAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGc > 7:62041/1‑147 (MQ=255) tgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAg > 3:151141/1‑148 (MQ=255) gggtggCTTTCAAGCTGATGAAGGCTCTCCAGGCCAAGGGCTGATCGTGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCGGTGA‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCa < 8:125792/148‑1 (MQ=38) gggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑AGCGAGCGCCGCGCGGGCGGCGCGCGATCTCACAGGCGATGAAAGCCTAAAGGCa < 1:116492/148‑1 (MQ=38) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTTCG‑‑ATACGGCGCCCCGCGGGGGGCGCGGGGTGTCACAGGCGGTGGAAGCCGAAACGCCTGCGGCt > 1:180245/1‑148 (MQ=255) cTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGCCGCGtt > 3:152511/1‑148 (MQ=255) gCCAGGCCAAGGGCGGATCGGGTTTGTGCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTccc < 3:83797/148‑1 (MQ=38) ccAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCTCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCa < 3:71915/148‑1 (MQ=255) gATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCa > 4:81636/1‑148 (MQ=255) gTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgctg > 5:153534/1‑148 (MQ=255) gTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGCGCGCCGCGCGGGCGGCGCTCGCTCTCACAGGGGAGGAAAGCCGAAAGGGATTCGTCTGGCGGCCCGGCCGCGTTCACCGTCCATGGCCCGCAATGCTGCCTCCGcc > 2:171668/1‑148 (MQ=25) cGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGGGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgt > 1:110923/1‑148 (MQ=255) cGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGGGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCGCTTGCCTGCCCCGCAATGCTGGCGCCGCCCAGCACGCACCgt > 4:6531/1‑148 (MQ=25) ttAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGCTCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGCCGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCCCAgtgg > 3:147806/1‑148 (MQ=38) gTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTa < 6:141030/148‑1 (MQ=255) ttttCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGGGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGgtgt > 8:153993/1‑146 (MQ=255) ttttCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGCAAGCCGAAAGGCATGCGTCTGGCGGCCCTGCCGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCCAGCCCGCACAGTGgggt > 5:32313/1‑146 (MQ=37) || CGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTA > NC_002947/1070103‑1070377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |